Ascochyta rabiei: EKO05_0000494
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Entry
EKO05_0000494 CDS
T09445
Name
(RefSeq) U4/U6 X U5 tri-snRNP complex subunit Prp1
KO
K12855
pre-mRNA-processing factor 6
Organism
arab
Ascochyta rabiei
Pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0000494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arab03041
]
EKO05_0000494
Spliceosome [BR:
arab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
EKO05_0000494
Complex C
U5 SnRNP specific factors
EKO05_0000494
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
TPR_19
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_16
Suf
HAT_Syf1_CNRKL1_C
TPR_2
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_15
TPR_Psidin_N
ANAPC3
ARM_TT21_2nd
DHR-2_Lobe_C
GP63
VirB4_TrbE_N
Motif
Other DBs
NCBI-GeneID:
62210031
NCBI-ProteinID:
XP_038803033
LinkDB
All DBs
Position
1:join(1701381..1701742,1701841..1704274)
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AA seq
931 aa
AA seq
DB search
MSRRDFLSMPAPENYVAGLGRGATGFTTRSDLGPAREGPSEEQMKEMLAKRAASLGQAAP
SAYGVTEKKEEEDDEADRFQDPDNEVGLFSSGMNYDKDDDEADRIYQEVDEKMDKRRRVR
REAREQQERDEYEKNNPKIQLQFADLKRALGAVSEEEWAALPEVGDMTGKAKRAREARMA
NARSYAVPDSVLSAASKSGELETSISTGDSDSGTMTNFASIGAAQLSALTVRLDSAASSN
PGTQTTTTSGTATSVDPKGYITALDKKEMQGGEVPVEDINRARVLLESAVKTNVNNGPGY
VALARLEEVAGKIHTAKKVIQKGCDMCPKSIVVWEEAIRLNRENLHNAKIIAANGIKLNP
KAIVLWKAAIDLEQTPAARKKVTRQALDHNPQSVELWKTLINDTEDIENVKLLFAKATDT
VPLSEELWISYARVSDADAAQQVLNKARKAIPTSWAIWVHACRLQEELGKVDICDKIMER
AVKALIKENAMIKREEWLAQAEICEEEGDKVTAGSIVKATIGWGLDEDDERRDTWLEDAK
SISNRGHYETARAILGHCVSVFPYSTTVWHASADLEKHHGTTESLLSVLERAVNACPNSE
SLWLLYARERWQAGDIEGARQVLGRSFEQLPGNENLYTRAVDFEADAGNYEQARSFLKVA
RDSAATDRIFMKSAVLERQLGDYETAIDICNQGLQNWPGSWKLHAIKGQIYEQLSKLKEA
QEALSIGTRAAPKSPMLYILLSRIQEKTGAVVKARSTLDRGRQQNPKNADLLCESVRLEH
RQGNIPAAQKVMATALQDCPTSGLLWAEKIMHLESRTQRKPRALEAIKKVEKDPQLFVVV
ARIFWSERRLDKAATWFTKAVVLDPDYGDGWVWFYKFLEQHGTEEKKQEVLSKAAMAEPK
HGEIWQSVNKDPKNARLGVEEVLKLAASKAE
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacgcgacttcctgtctatgcctgcgcccgagaactatgtagctggtctcggg
cgtggtgctaccgggttcacgaccagaagcgatcttggtccggcacgggagggcccttct
gaggagcagatgaaggaaatgttggccaagcgcgcggcttctttaggccaagcggcccca
tctgcctatggtgtcacggagaaaaaggaggaagaggacgacgaggcagatcgattccag
gaccccgataacgaggtgggtttgttctcgagcggcatgaactacgacaaggacgacgac
gaagcagaccgcatataccaggaagtggacgagaaaatggacaagcggcggcgagtgaga
cgggaagctcgcgagcaacaagaacgagacgaatacgaaaaaaacaaccccaagattcaa
ctccagttcgccgacctgaagcgtgcgctcggcgctgtatcggaagaagaatgggctgcg
ctacccgaggttggagacatgacgggcaaggcgaagcgcgcgcgagaagctcgcatggca
aatgcacgatcgtatgcggtacctgacagcgttctgtccgccgcgtccaaatctggcgag
ctggagacttccatatccacaggcgactccgactcgggcaccatgaccaactttgcctcc
atcggtgctgcacaactgtccgctttgacggtgcgactagattcggcggcgtcgagcaac
cccggtacgcagacaacgacaacctcagggacggcaacttcggtcgaccccaaaggttac
atcacggcgttggacaagaaggaaatgcagggcggcgaagtgccagtggaagacataaac
cgcgcgcgtgtcttattggagtcggcagtcaagacgaacgtcaacaacggccccggttat
gttgcgctagcacgtctcgaagaagttgcaggcaagattcacaccgcaaagaaggtcatc
cagaaaggttgcgacatgtgtcccaagtcgatcgttgtgtgggaggaagccatccgactg
aaccgcgagaacttgcacaacgccaagatcatcgctgccaacggcatcaagcttaaccca
aaggctattgtgctgtggaaagcagccatcgacctagagcagacgccagcagctaggaag
aaggtcactcgacaagcattggatcacaaccctcagtctgtggagctctggaagaccttg
atcaacgacaccgaagacatcgagaatgtaaaactgctgtttgcaaaggctacagacacg
gtcccgctctcagaagagctgtggatctcctatgcgcgtgtgagcgatgcagacgccgct
cagcaggtcttgaacaaggcgcgcaaagccattcctaccagttgggcgatttgggtacac
gcttgcagactgcaagaagagcttggaaaggtcgacatttgcgacaagatcatggaacgc
gcggtcaaggccttgattaaggagaacgctatgatcaagcgcgaagagtggctggcacaa
gccgagatttgtgaagaggagggcgacaaagtgactgcgggctccattgtgaaagcgacc
atcggttggggtctggacgaggacgacgaacgacgcgacacttggctggaagacgcaaag
agcatctccaatagaggtcactacgaaacagcccgggctattcttgggcactgtgtatcc
gttttcccatactcgaccacagtctggcatgcgtctgccgaccttgagaagcatcacggg
actaccgagtcgcttcttagtgtccttgagcgtgctgtcaacgcctgcccgaactcggaa
tcgttgtggctgctgtatgcacgagaaaggtggcaggccggagatattgagggtgctcgt
caggtgttaggacgatcgttcgagcaacttccaggtaacgagaatctctacacaagagct
gtcgactttgaagcggacgctggcaactacgaacaggcgcgcagtttcttgaaggttgcg
cgagattcggctgccaccgatcgcatatttatgaagtctgcggttctcgagcgccaactc
ggcgactacgaaactgctatcgatatctgcaaccaaggcctgcaaaactggcccggcagt
tggaagttgcacgccatcaaggggcagatttacgagcagctgtcgaagctgaaggaggca
caagaagcactcagcattggcacaagagccgcaccaaagtcacctatgctctacattctg
ctctcgagaatacaagagaagaccggtgctgtcgtcaaagctcgctcgacacttgaccgc
ggtcgccagcagaaccccaagaacgctgacctcctctgcgaatcggtccgcctggaacac
cgccagggcaacatccccgctgcccaaaaagtcatggctactgctctccaagactgtcct
acttccggacttctctgggctgagaagatcatgcatctcgaatctaggacccaacggaaa
ccgcgcgccctcgaagctatcaagaaagttgaaaaggacccgcagctctttgtggtcgtt
gctcgcatcttctggtccgaacggaggcttgacaaagcggctacttggttcacaaaggcg
gtggtcctggatccagactacggtgacggatgggtctggttttacaagttccttgagcag
catgggacggaggagaagaagcaggaagtgttgagcaaggccgcgatggcggaaccaaag
catggggagatttggcaaagtgtaaacaaggatccaaagaatgcgcgactcggtgttgag
gaggtattgaagcttgcagctagtaaggcggagtag
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