Ascochyta rabiei: EKO05_0000568
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Entry
EKO05_0000568 CDS
T09445
Name
(RefSeq) Replication factor A protein 1
KO
K07466
replication factor A1
Organism
arab
Ascochyta rabiei
Pathway
arab03030
DNA replication
arab03420
Nucleotide excision repair
arab03430
Mismatch repair
arab03440
Homologous recombination
arab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKO05_0000568
03420 Nucleotide excision repair
EKO05_0000568
03430 Mismatch repair
EKO05_0000568
03440 Homologous recombination
EKO05_0000568
03460 Fanconi anemia pathway
EKO05_0000568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
arab03000
]
EKO05_0000568
03032 DNA replication proteins [BR:
arab03032
]
EKO05_0000568
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0000568
Transcription factors [BR:
arab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
EKO05_0000568
DNA replication proteins [BR:
arab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
EKO05_0000568
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
EKO05_0000568
MMR (mismatch excision repair)
EKO05_0000568
DSBR (double strand breaks repair)
HR (homologous recombination)
EKO05_0000568
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
DUF4503
Motif
Other DBs
NCBI-GeneID:
62210106
NCBI-ProteinID:
XP_038803108
LinkDB
All DBs
Position
1:complement(join(1908533..1908647,1908695..1910143,1910192..1910282,1910329..1910489,1910540..1910574))
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AA seq
616 aa
AA seq
DB search
MAEQAITQGAIKSIFEPSGCFVEHPVLQCVQIKTMEPKAGDANPVQRFRVVLSDVRNFIQ
TMIATTANEIVTSGRLKKGSIVRLLKYNPQQVKDKNILIIMELDVLEQYGELEKIGQPEA
LDTKPKQQPAAISGNNFYGNKPAPAPAPAPQQQQRSLPVHQSNPSTSTHPHLYPIESLSP
YAHKWTIRARCTHKGEMKEWHNAKGTGKLFSVNLLDDTGEIRATAFTEVAERLYPIFEEG
VVYYISAPCRVTLAKKQFSNLPNDYELQFERDTEVEKAEDQDNKPQIRFNFTKIGELNSV
EKDTTIDTIGVLKEVGEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFEAP
LESIVAFKGVKVSDFGGRSLSLLSSGSMMLDPDIDEAHKLRGWFNAVGQNATFSTHQSLA
PASGGSKNDSKIISQVIEEEGYLQDTPTYMSIRASVVYVKNTTVAYPACSTPNCNKKVIE
ENPGSWWCEKCQTSFPEPTYRYVLSVNVADHTGTLWLSCFDEAAQLIVGMSANEVMKIKE
ADEENNTTGNFLNIMQDATCKTFNFRVRAKMETYQDQPKPRYQVLNIYPLNYAQEANKLA
QLIKQYDMDDNSLFVN
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggcgatcacacagggtgctatcaagagcatctttgagcccagcggttgc
ttcgtggagcacccggtcttgcaatgcgtgcaaataaagacgatggagccaaaggctggc
gacgcgaacccggtgcagcgcttccgtgttgttttgagtgatgtccgcaacttcatccag
acaatgatcgcgaccactgcgaacgagattgttacctctggcaggctcaagaagggttca
atagtacgcctgctgaagtacaacccccagcaggtcaaggacaagaacatcctgatcatc
atggagctcgatgtcctcgagcaatacggcgagctcgaaaagatcggtcagcccgaggca
ctcgacacaaagcccaagcaacagcctgctgccatttcaggcaataacttctacggcaac
aagcctgcacccgcacccgcacccgcaccccagcaacagcaaaggtcgcttcccgtgcac
cagagcaacccgagcacatccacacatccccacttatacccgatcgagtctctctcccct
tacgcgcacaagtggacaatccgtgcccgatgcacacacaaaggtgagatgaaggagtgg
cacaacgccaagggcaccggcaagctttttagtgtgaacctgctggacgacaccggcgag
atccgtgcaacagccttcactgaagtcgcggagaggctgtatccaatcttcgaggaaggt
gtggtatactacatctccgcaccctgcagagtcacactcgcaaagaagcagttctcgaac
ctgccaaacgattatgaactgcaattcgagcgcgacactgaagtcgagaaggcagaagac
caggacaacaagccccagattcgtttcaacttcaccaagattggtgagctcaactctgtc
gagaaagacaccactatcgataccattggtgtactcaaggaggttggtgaggtgactacg
ataacgtcgaagaacaccaacaaagatttctccaagcgagaactgactctcgctgatgac
agtcaaacgtcagtgcgactcacaatctggggcaagacagcagagagcttcgaagcccca
ctcgagtcgatcgttgctttcaagggcgtcaaggtctccgattttggtggccgaagtctg
agtcttctaagctctggctccatgatgcttgatcccgacatcgatgaggcacataagctg
cgagggtggttcaatgctgtcggccagaacgcaaccttctccacccatcagagtctggca
ccagcttctggcggctcaaagaacgacagcaagatcatctctcaagtcatcgaagaagag
ggctacctccaagacacaccaacatatatgagcatacgagcttctgttgtgtacgtaaag
aacacgactgtcgcataccctgcatgctcaacaccaaactgcaacaagaaagtcatcgag
gagaatcctggttcctggtggtgtgagaagtgtcagacatcgttcccggaaccaacatac
cgctatgtactcagcgtcaacgttgcagaccacactggcacactgtggttgagctgcttt
gacgaagccgcacagttgattgttgggatgtccgccaacgaagtgatgaagatcaaagag
gcagacgaggaaaacaataccacagggaacttcctgaacatcatgcaagacgctacctgc
aagaccttcaatttcagagttcgggcgaagatggagacataccaggaccagcccaagcct
cgttaccaagtgctaaacatctacccactcaactacgcccaggaggccaacaagctcgca
caactcatcaagcagtacgacatggacgacaacagcctgttcgtgaactag
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integrated database retrieval system
