Ascochyta rabiei: EKO05_0000594
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Entry
EKO05_0000594 CDS
T09445
Name
(RefSeq) U3 snoRNP protein
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
arab
Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arab03009
]
EKO05_0000594
Ribosome biogenesis [BR:
arab03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
EKO05_0000594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
CEP104-like_TOG
BP28CT
TPR_CAND1
Motif
Other DBs
NCBI-GeneID:
62210133
NCBI-ProteinID:
XP_038803135
LinkDB
All DBs
Position
1:complement(join(1982200..1988749,1988803..1990199))
Genome browser
AA seq
2648 aa
AA seq
DB search
MSRGATGKPSAKPARPGARSSSKPSSKVRAPKRTKGGTQSSRNHRFKGFSQRIAELKIEP
VRRGRNAIIDDAELESTFSYFRDSFLEWKELNLSENFVHFSRKVSPLCDSLPQVLHHSDR
IIDLLVEFIEKGEKYSEEPLLSLLAHLAHDLGEQFEKHFERVVKTVAHLAATHAEIEVIE
WSFTCLAWLFKYLSRLLVPDLRPTFDLISPLLGRAQQKAFVARFAAESLSFLVRKAGAAY
HRDKTPLRLIVRRISGQLKELQDNEKDYEFQQGIMFLLADSLKGIHRGIHSSATAILQAL
LAEAYHDDYVSLQTPPLEPVLVGVVTAVIHHTDAENFNPLLDIILAQIQSASSHHAALSS
RLLFIVCGVRRGSRVQDWKPVLASLDHVLSAAKNMADLESTEAWDLLSATAVVFQYCALD
AAIPYEKLLEGLTKGSWDRYFLPFCNMFAELGAERFKTLLLPYFKRFVAQKAHEHGPELC
IILPQLYQSGTISAGAVHTSDRWQALLDSPFHELSKVQTEEADLDKSTYHCNALLDALEI
LAVPEDKTTSIWDELKELLGTAIRVDSTGKARKTDIFGTGKGLQYLVDKSVDDQTFALDL
WPSLCQATPVYAHSLSFWKALFSLMQKKKKAISTSGPHMEPLKRQLMRCLGSPSHDMRLT
AIYILEIIAGKSEKLQNIISVAMMIEQTPLDLENQRSISMRIGQLAKLYPEICADEWMGE
AIPTFCFGLLHVRMASVWDDTCAALKAICDTKEGEGFVSQIAFAWLGEPESLENSASGLA
KNTAQKRYANEFECTNIFRLQDLVSNNQELSYNIDDKLEVTFDSKHPQVSFINSFSRTQA
LRLLNALPQVAEKRSRLLVPVLLDWALDQPVAEIQDEDDMIDEIPVSTQQRWSRKDQKAM
LSVFSKFNNPKVLFRSSEVREALLSLLSNGDVEIQKTALQALLTWKDRAVTPYQEELLGL
LDDARFRDELPVFLSEGKIQDSDLAEVLPIILRLLYGKVIAGKRGLESKRKSVFIGLKNR
FGDDAIHQFLSIAFGPLSGASVLEDGALDEDLLRKDLIDTRKQVGMLNMLDDLLSTFKTT
FTPFTVDVVDPIMYCLVKASRDLQAAALVGEEADVDDSRKFQVSLLRTVRQRALQSLARL
FESCPDFNWYPYTAAIVKELVEPRLEQFPIETAQSISGLLRLFASWSKATSTAPFLVEHN
KEILIKIIDCLDVPSAKDEVKQFVLDDILRNIFSLVATEEQSTSVDAKLQRNRIHTDIIQ
PYSNAILSRVGGLLRKSPSKEVLESGVLAIADLAPHVVGSTESRSMIEIATFLIRQPSKR
VNPRTKLGLLKILHEFIQRCDAKSLGELFNGIYDAICPMFAFFQDRSARSVLCDVVQDLS
GNREELADVAKLCQELNSFAKGRVDEPDFERRSQAFNQINDQGYRSFSLMQWKPLVYNML
YFIKDNDELSIRVNASSTLRRFIEVSQDDDFRAFITAAIIPGIQHGMREQSELVRTEFLA
VTEQLVKSHRDWAPVADLYALVSDDEEASFFSNVLHIQGHRRLRALRRLAANASHLQPGN
TYHILLPLLEHFVFNKADDDSADNLAGETIRTLAALVEWLEWPQFRSLFKRYIGYLTSKE
DMQKAIVRLIGGLMDGLNQAGRKKGYVTASQPAADTDDTPEAEPGANADVMDIDTPTSTL
SKTLPQQDKLTKDLVNNFLPDLTAFLHKKDEATTSLRVPVAVALTKVLLVLPSTEIEGRL
PGVLLDICHILKSRTQESRDQSRKTLSEIAVLTGPNYVGFILKALRTALQRGYQLHVLSY
TLHYILVNMASQLKPGDLDYCVADVVDIVMDDTFGVTGQEKDAEEYISKMKEVKSSKSFD
TMDIISRSSTPAHLIKLINPVKSLLLERINAKMVQKIDELLRRIGLGILQNPTVYSRDIL
VFCYELIQEVYRASATTQKGDKTDPKLRRFLVNRRGAAKSGARLSTSSYIYKITRFSLDI
LRTVLRKHDDLQTPQNLAGFLPIIGDTMVQGQEEVQVSAVRLLTAIIKVPMDEMDANCPV
YVDEAVRAIKGAHSSNTELAQASLKLVAAVLRERPNVVIRERDIGHLIKRLLPDLDELDR
QGVSFGFLKAVMSRRIDVPEVYEAMDKVAEMMVTNQTRSARDLARSHYFQFLTSYTQSEK
RFKKSMEFLLKNLRYEHVEGRQSVMEALDLIITKALPRFPEKAQFDYHGMIFLPLINTLA
NDDSAKCRELASLLVKRLFQHASEKRLQNFTNDLKSWLEQGENTGLKRLGIQCWGFYFEA
LDTEDDEPKELSYVLDGLDSTIDESLARRDEDDWELLYYSLTLISKICKKYQDTMLSADK
EGLWTAVQVSVSYPHAWVKLKAAELMGTYFAHLAITNKDVGLGALPLKGSGGLQLAEQNM
IQLTNASLRNLLNPDVSEQLCTQSVKNIAFLARCLAVNDAKWQWHNADDEDEVEEVPETN
AADDDASSEEDVTISKKTPPAAIHRLMIRLSGIIRRDTSSMNAKTAIMNLLETMAAKFPL
EPLTTSLPHLLTTFNTLVDPATTIPRAHTNASSTSLNEPNELYKALIDKARETMNTLQKR
MGTQEYLKVMSDVQKAVRERRDERRRKRKVEAVADPEKWGKEKKRRNDIKRVKRKERGAE
HRGQRRGW
NT seq
7947 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggggtgcaactggcaaaccctccgcaaagcccgccaggcccggcgcgaggtcg
tcctccaagccgtcctcgaaggtgcgcgcgccgaaacgaaccaaaggcggcacgcagtcg
tcgcgcaaccaccgcttcaagggcttttcgcagcgcattgcagagctcaaaatcgaaccc
gtgcgccgcggtcgcaacgccattatcgacgatgccgaactcgaaagcaccttttcgtac
ttcagagactccttcttggagtggaaagaacttaacctgtcggaaaactttgtgcacttc
tcccgcaaggtgtcgccgctgtgcgatagccttccgcaagttctccaccacagcgaccgc
ataatcgacctgctcgttgagttcatagagaaaggcgagaaatacagcgaggagcctttg
ctcagtctactcgcacacctggcacacgacctgggcgagcagttcgagaagcactttgag
agggtcgtcaagaccgtggcgcacctggcggctacccatgccgaaatcgaagtaatagag
tggagcttcacctgcctggcatggctcttcaagtacctctccaggcttctggtaccagat
ctccggccaacatttgatctgatatcgccactgctgggacgcgcacaacagaaagcattt
gtcgcgcgttttgccgcagagtcactcagcttcctcgtccgcaaagccggagccgcatac
caccgagacaagacaccccttagattgatcgtcagacgcatctctgggcagttgaaagag
ctacaggataacgagaaggactatgagttccagcaggggataatgttcctgctcgcagac
tcgctcaaggggatacaccgcggcattcactccagcgctacagcaatactccaggcattg
ttggccgaggcgtaccacgacgattatgtgtctttgcaaacaccaccgctcgaaccagtt
ctggtgggcgtcgtcaccgcagtcatccaccacacggatgcggaaaacttcaaccccctt
ctcgacatcattcttgctcaaattcagtcagccagttcgcaccatgcggcgttgtcatca
cgattgctgttcatcgtctgtggtgttcggagaggttcccgtgtccaggactggaaacct
gtgcttgcttctctcgatcatgtgcttagcgcagcaaagaacatggcagacctcgagtct
accgaagcctgggaccttctgtcagcgactgccgttgtgttccaatactgcgccctcgat
gccgcgataccctacgagaagctgctagaaggcctcaccaaagggtcttgggacagatac
tttttacccttctgcaacatgtttgcggagcttggcgctgaaaggttcaagactctcctg
ctgccatacttcaagcgatttgttgctcagaaggcgcacgaacatggaccggagctttgc
atcatacttcctcaactctatcagagcggcactatatccgcgggtgccgttcacacgtca
gaccgttggcaagcgcttctcgacagccccttccatgagctctccaaggtgcagacagaa
gaggcagatttggataagtccacctaccattgcaacgccttacttgatgcactggagatt
cttgccgtacccgaagacaagacaacaagcatctgggacgaactcaaggaactattagga
acggctatacgagtggattcgactggaaaggctcgcaagaccgatatatttggcactgga
aagggcctccagtacctggtggataagtcagtcgacgatcagacttttgcgcttgatttg
tggccttcactgtgtcaagccacaccggtttatgcgcattccctttcgttctggaaggcg
ctgttcagtttaatgcaaaagaagaaaaaggccatttcaacgagcggccctcatatggag
cctttaaagcgccaactcatgcgttgcctgggttcaccatctcacgacatgaggttgaca
gccatctatattctggagatcattgcaggcaagagtgagaagctgcaaaacatcatatcc
gttgcgatgatgatagagcagacaccactggatctcgagaaccaacgctccatttcaatg
cgcataggtcagttggcgaagctttatcctgagatttgcgcagatgagtggatgggcgag
gcgatacccacattctgcttcggcctgttacatgtgagaatggcgtcagtctgggacgac
acttgtgcagcactcaaagccatatgcgacaccaaagaaggcgaaggctttgtctcgcaa
attgcctttgcctggcttggtgaaccggagagcttagaaaactccgcaagtgggctcgct
aagaacactgcgcagaagcggtatgcaaacgagttcgagtgtaccaacatattccgattg
caagacctcgtttccaacaatcaagagctatcgtacaacattgacgacaagcttgaggta
acgttcgacagcaagcacccacaggtttccttcatcaattctttcagtaggacacaagct
ttacgtctgctgaatgcgttaccgcaagtcgccgagaaacgttcgcgtctccttgtacct
gtcctcctagactgggcgctggaccagccggttgcggagattcaggatgaggacgatatg
atcgatgagatacctgtgtcaacacaacaacgatggtcgcgaaaggatcagaaagctatg
ttgtctgtcttctcaaagttcaataacccgaaggttcttttccgatctagtgaggtccgc
gaggctctactatcgttattgagcaacggcgatgtcgaaattcagaaaaccgctcttcag
gcgctcctaacatggaaagaccgtgcagtgacaccgtaccaggaagagctgcttggctta
cttgacgatgctcgctttcgcgatgaacttcctgttttcctcagcgaaggcaagatccag
gacagtgatctcgcagaagttctacccatcatcctgcgactactgtacggcaaagtcatt
gcgggcaagcgagggctggagtcgaagaggaagtccgtgttcattggactgaagaacaga
ttcggggatgacgccattcaccaattcctgagcatcgcgtttggccctctcagtggtgca
tccgtccttgaagatggcgcactcgatgaggacttattacgcaaggatttgattgacact
cgcaagcaggttggtatgttgaacatgctcgatgacttgctcagtacgtttaagacgaca
ttcacaccatttaccgtcgacgtcgtggatcccatcatgtattgtctcgtcaaagcgtca
cgagatctgcaggcagccgcattggtaggagaggaggccgacgttgacgatagccgtaag
ttccaggtttcactgctgagaactgtccgccaacgcgccctacaatctttggctaggctg
tttgaaagttgtccggacttcaactggtacccatatacagcagcaatcgtcaaagagctt
gtcgaaccaaggttggaacagttccctatcgagactgctcagtccatctccggtcttctt
cgactgtttgcatcatggtcaaaggccacatcaacagcacctttcctcgtcgaacacaac
aaggaaattctcatcaagatcatcgactgcctggacgtaccttcggctaaggatgaagtg
aagcagttcgttctggatgacatcctccgcaacatcttttcacttgtcgctacagaggaa
cagtctacatctgtagatgcaaagctccagcggaatcgcatccatacggatatcatccag
ccatactcaaacgcgattttgagtcgagtaggtggccttctccggaaaagccccagcaaa
gaagtgctcgagtcaggagttttggctattgccgacctcgcgcctcacgttgttggatcg
actgagtcccgtagcatgatcgagatcgcaactttccttatccgacagccatcgaagcgg
gtcaatccgaggacgaaactcggcttactcaagatcctgcacgagtttatccaacggtgt
gacgcaaaaagcttaggagagcttttcaatggtatctacgatgctatatgtcctatgttc
gctttcttccaggaccgatctgctcgcagtgttctttgcgacgtcgttcaggacctgtct
ggaaacagagaggaattggcagacgttgcaaagctctgtcaagaactcaactcgttcgca
aaaggacgggtggacgaacctgacttcgagcgtcgttcacaagccttcaaccagatcaac
gaccagggctatcggtcgttctcgctcatgcagtggaagccattggtgtacaatatgctc
tacttcatcaaagacaacgacgaattgagcattcgagtgaacgcatcatcgacactgcgc
aggttcatcgaagtttctcaagatgacgactttagagctttcatcactgctgcgattata
cccgggatacagcacggaatgcgtgagcagtccgagcttgttaggacagagttcctggct
gttacagaacagctggtgaagagccatcgcgactgggctccggtcgctgacctgtacgcc
cttgtctcggatgatgaggaggcttctttcttcagcaacgtgttgcacatccaaggccat
cgaaggctgagggctcttcgccgattggctgctaacgcttcccatttgcagccgggaaac
acctaccatatcctcttgccgttgttggagcatttcgtgttcaacaaagcagacgatgat
agtgccgacaaccttgctggagaaacaatccgtactcttgctgccttggtcgaatggctg
gagtggcctcagttcagatcccttttcaagcgctacatcggctatctgaccagtaaagaa
gacatgcagaaagctattgtgcgactgattggtggcctcatggatggtctcaatcaagct
ggaagaaagaagggatatgttactgcctcacaacccgcagcagataccgatgacactcca
gaagcagagccaggcgctaatgcggacgtgatggacatcgatacccctacctccacacta
tcgaaaacactcccacaacaagacaagcttactaaggaccttgtcaacaactttttgcca
gacttgacagctttcctccacaagaaagacgaagcaacgactagtttacgtgtacctgtc
gcggtcgcgctgacgaaggttctccttgttcttccatccacagagatcgagggacgcctt
cctggcgttctgctggacatctgccacatcctcaagagtcgaacacaagagagtcgtgac
cagtcaaggaagactctgagtgagatcgctgtgctcactggaccaaactacgttggcttc
attctcaaggctttgcgcactgcgcttcagcgaggttaccagttacacgtgctgtcttac
actctgcactacattctggttaacatggccagccagctgaaacccggtgacctcgactat
tgcgttgcggatgttgtcgacatcgtgatggatgacaccttcggcgttactggacaagaa
aaggacgcagaagaatacatcagcaagatgaaggaggtaaagagcagcaagagcttcgac
acaatggacatcatctcccgctcaagcactcctgctcatctcatcaaactcatcaatccg
gtcaagtccttgcttctcgaaaggatcaacgcgaagatggtgcagaagatcgatgagcta
ctgcgtcgtatcggcctgggtatcttgcaaaacccaacagtctacagcagagacattctc
gttttctgctacgaactgatccaggaagtatacagagctagcgcaacaacacagaagggt
gacaagacggatccgaagttgaggcgatttctcgtcaacagaaggggcgctgccaagtcc
ggagcgcgtttgtcaacgtcatcgtacatctacaagatcacacgcttcagcttggatatc
ctaaggactgtacttcgtaagcatgatgacctccagacgccacaaaatctggctgggttc
ctgccgatcatcggcgacacgatggtacaagggcaagaggaagtgcaagtgtcagctgtt
cgtctacttactgctatcatcaaagtacccatggacgagatggatgccaattgtcctgtg
tatgttgatgaagctgtgcgggcgatcaagggtgcccactcatcgaacaccgagcttgcg
caggcttcacttaaactagtagcagctgtgcttcgtgagagacccaacgtggttatccgc
gagcgagatatcggtcacctgatcaagcgtttactgccggacctggatgagcttgaccgc
cagggtgtaagctttggtttcctgaaagctgtcatgagtcgtcgcattgacgtacccgag
gtgtatgaagccatggacaaggttgcagagatgatggttaccaaccagacaagatcagcc
agagatttggctcggagccactactttcagttcctgacgtcgtacacacagagcgagaag
cgcttcaagaagtccatggagttcttgctcaagaatttgcgctatgaacacgttgaaggt
cggcagtcggtcatggaagccttggacctcatcattaccaaagctctgcccaggttcccg
gagaaggcacagttcgattaccatggcatgatcttcctaccgctcatcaacacgcttgcc
aatgatgactccgccaaatgtagagagcttgccagtttacttgtgaaacgtttgttccag
catgcgagcgaaaagcggctgcaaaactttacgaacgatctaaagagttggctcgagcaa
ggcgagaataccggtctgaagcgccttggcattcagtgttggggcttctatttcgaagcg
cttgacactgaagatgatgagccgaaggaattatcatatgtgctggacggacttgattct
acaattgacgagtctctggcgcggcgcgatgaggatgactgggaactcctatattactca
ttgacccttatctcaaaaatctgcaagaagtatcaagatacgatgctctctgccgacaag
gagggcctgtggactgcagtccaggtaagcgtttcatatccccacgcttgggtcaagctc
aaagctgctgaattgatgggcacatactttgctcatctcgccatcaccaacaaggacgtt
ggcctcggcgcgcttccgctcaagggatctggcggcttgcaattggccgaacaaaacatg
attcagctcaccaatgcttcgctgaggaatttgctcaacccagatgtgtcagaacaactg
tgtacgcaaagtgtcaagaacattgccttcttggcgagatgcttggccgtcaatgacgcg
aagtggcagtggcacaatgccgacgacgaagatgaggtcgaggaagtaccagagacaaat
gccgcggatgacgacgcttcttcagaagaggacgttactatcagcaagaagactccaccc
gcggccatccaccgtctcatgatccgcctttccggtattatccgccgcgacacaagctcc
atgaatgccaaaaccgcaatcatgaatcttctcgaaacgatggcggctaagttccctctg
gaacccctcaccacctcgctcccacacctcctcacaacattcaatacccttgtcgacccc
gctactactatcccgcgcgcccacaccaacgcctcttccacatctctcaatgagccgaac
gagctttacaaggctctcattgacaaggcaagggagaccatgaacacactacagaagcgt
atgggcacacaagaatatctcaaggtcatgagtgacgtgcagaaggcggtcagggagcgc
agagatgagcgcagaaggaagagaaaggtcgaggccgtggctgatccggagaaatggggg
aaggagaagaagaggaggaacgacatcaagagggtcaagagaaaggagaggggtgctgag
caccgaggtcaaaggaggggatggtag
DBGET
integrated database retrieval system
