KEGG   Ascochyta rabiei: EKO05_0001039
Entry
EKO05_0001039     CDS       T09445                                 
Name
(RefSeq) Protein sof1
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
arab  Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:arab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:arab03009]
    EKO05_0001039
   04121 Ubiquitin system [BR:arab04121]
    EKO05_0001039
Ribosome biogenesis [BR:arab03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    EKO05_0001039
Ubiquitin system [BR:arab04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     EKO05_0001039
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Sof1 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_Gbeta EIF3I WD40_RFWD3 Beta-prop_Aladin WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_HPS5 NBCH_WD40 MIOS_WD40 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_ACSF4 WD_LRWD1 Beta-prop_SPT8 DUF7099 Beta-prop_IFT140_2nd Tricorn_2nd
Other DBs
NCBI-GeneID: 62210580
NCBI-ProteinID: XP_038801803
LinkDB
Position
2:join(194649..195443,195492..196037)
AA seq 446 aa
MKIKALSRSTSSAQAPGSNVAKITRNLDPTQHPFERAREYTRALNATKMERMFAQPFLGD
FEPGHVDGVYSFAKDPNSLEHFASGSGDGVVKVWDLTSREEKWQAQAHENMVKGMCWTHD
KRLITCGADKQIQMFEPYAQPSKSPPKATWHGNAAFTSVSHHRSMPSFAAASNVVSIYDT
ARTSGAPVQNLVWPSAIDTINHVTFNQVETSILASCATDRAIVLYDMRTSSPLHRTVLNF
ASNCISWNPMEAYNFAVANEDHNCYIFDMRNMKRALQVLKGHVAAVMSVEFSPTGEELVS
GSYDRSIRLWERQKGHSRDMYYTKRMQRVFSVAWSPDNNYVLSGSDDGNVRLWRAKASAR
QGVKSFALQQKLQYDEALKERYKHMPEIKRINRHRHVPKAVKKAGEIKSEELKALKRKEE
NERRHTKKGKVRRKAEREKMVLAKEQ
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgaagatcaaagccctcagccggtcgacgtcgtcggcgcaggctcccggatcgaatgtc
gcaaagatcacccgcaacctcgaccccacccagcatccctttgagcgcgcacgcgagtac
acgcgggcactcaatgcgaccaagatggagcgcatgttcgcgcagcccttcctgggagac
ttcgagcccggccacgtagacggcgtctactcgttcgccaaagaccccaactctctcgag
cactttgccagtggcagtggagacggtgtggtgaaagtatgggacttgacgagcagggaa
gagaagtggcaggcccaggcgcacgagaacatggtcaagggcatgtgctggacgcacgac
aagcgtctgatcacctgcggcgcggacaagcagatacagatgttcgagccctatgcccag
ccctccaagtcgccgccgaaagcaacgtggcacggaaacgcagccttcacatcggtctcg
caccaccgctccatgccctctttcgctgccgcctccaacgtcgtctccatatacgacacc
gctcgcacgtcaggcgctcccgtgcagaacctcgtctggccttcggctatcgacaccatc
aaccatgtcactttcaaccaggtcgagacgtccatcttggcgtcctgcgcaacagatcgc
gccatcgtgctctacgacatgcgcacaagctctcccctccaccgcaccgttctcaacttc
gcctcaaactgcatctcttggaaccccatggaagcgtacaactttgccgttgccaacgaa
gaccacaactgctatatctttgacatgcgaaacatgaagcgagcgttacaagtcttgaag
gggcatgtagctgccgtcatgagcgttgagttcagtccaacaggagaagagcttgtctcc
ggttcttacgatcgatcaattcgtctgtgggaacgacagaagggacactcccgcgacatg
tactacaccaagcgcatgcagcgtgtcttctctgttgcctggtctcctgacaacaactac
gtgctcagtggctccgacgacggcaacgtgcgcttatggcgagctaaagcctctgctaga
cagggcgtcaagtctttcgctttgcagcagaagctgcagtacgatgaggcgctgaaggag
cgatacaagcacatgcctgagatcaagcgtatcaacaggcacaggcacgttcccaaggca
gtcaagaaggctggcgagatcaagtcggaggaactcaaggcgctcaagaggaaagaggag
aatgaaaggagacacaccaagaagggcaaggtcagacggaaggccgagcgtgagaagatg
gtgctggcaaaagagcaatag

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