Ascochyta rabiei: EKO05_0001260
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Entry
EKO05_0001260 CDS
T09445
Name
(RefSeq) RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
arab
Ascochyta rabiei
Pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0001260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arab03041
]
EKO05_0001260
03009 Ribosome biogenesis [BR:
arab03009
]
EKO05_0001260
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKO05_0001260
Spliceosome [BR:
arab03041
]
Complex A
U2 snRNP components
U2 related factors
EKO05_0001260
Complex B
EKO05_0001260
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
EKO05_0001260
Ribosome biogenesis [BR:
arab03009
]
Eukaryotic type
90S particles
Helicases
EKO05_0001260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_23
T2SSE
ABC_tran
nSTAND3
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
62210793
NCBI-ProteinID:
XP_038802016
LinkDB
All DBs
Position
2:join(1012781..1014991,1015038..1015154)
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AA seq
775 aa
AA seq
DB search
MTVKRESDDDASARTKRVKTEDGHGEVKRENNPYLSHWNESTAVKRENNPYLSHWNESTA
VKSGDGLAGFRRHATSSEQAMAAEDGPSNPFTGRPLSSKYMSILKTRRDLPVHQQRNEFL
KLYQESQILVFVGETGSGKTTQIPQFVLYDDLPQQSGQMVACTQPRRVAAMSVAQRVADE
MDVTLGEEVGYTIRFDDKTGPNTIMKYMTDGMLLREAMHDNNLSRYSTIILDEAHERTLA
TDILMGLLKEVVLRRKDLKLIIMSATLDATKFQKYFHNAPLLAVPGRTHPVEVFYTPAPE
RDYVEAALRTVLQIHATEPEGDVLLFLTGEEEIEDACRKISLEAQDLTREGGAGPLVVYP
LYGSLPPAQQQKIFSAAPQPLTPGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKV
YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTESAFKKELIEQTYPEILRSN
LASTVLELKKLGVDDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTTLGRLASEFP
LDPALAVMLITSPEFYCSNEILSLTALLSVPQVFVRPANNRKHADEMKELFAHPKGDHLT
MLNVYHAFKGEDAQANPKQWCHDHFLSYRALQQADNVRMQLKRIMERSELELMSTPFENK
KYYENIQRALVAGFFMQVAKRDGNGKQYTTVKDEQTVLLHPSTVLAEDSEWVVYNEFVLT
TKNYIRTVTSVRPEWLMDISPNYYDLSTFKKGDIKTALQRASTKLLRKEAEKGRR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaagcgcgaatccgacgacgacgccagcgcgcgcaccaagcgtgtcaagacg
gaagacgggcacggcgaggtcaagcgcgagaacaacccgtacctcagccactggaacgag
tcgacggccgtcaagcgcgagaacaacccgtacctcagccactggaacgagtcgacggcc
gtcaagagcggagacggcctcgcaggcttccggcgccatgccacatcgtcggagcaggcc
atggctgccgaggacgggcccagcaatccgttcaccggccgtccgctgtcgagcaagtac
atgagcatcctcaagacgcgccgcgacctgcccgtgcaccagcagcgcaacgagttcctc
aagctgtaccaggagtcgcagatcctcgtctttgtcggagagacgggttccggaaagacg
acacagatcccgcagtttgtcctctatgacgatctcccccagcagagcggccagatggtc
gcctgcacccagccgcgccgagtcgccgccatgtcggttgcgcagcgtgtcgccgacgag
atggacgtgacgctgggcgaggaagtcggttatacgatccgcttcgacgacaagacgggc
cccaacaccatcatgaagtacatgaccgacggcatgttgctgcgcgaggccatgcacgac
aacaacctgtcgcgctacagcaccatcatccttgacgaggctcacgagcgtaccctggcc
accgacatcctgatgggtctgctgaaggaggtggtcttgcgccgcaaagacctcaagctc
atcatcatgagcgccaccctcgacgccaccaagttccagaagtacttccacaacgcccca
ctgctggctgtgcccggtcgcacgcaccctgtcgaggtcttctacaccccagcgcccgag
cgcgactacgtcgaggctgccctgcgtaccgttctgcagatccacgccaccgagcccgag
ggtgacgtgctgctcttcttgaccggagaggaggaaatcgaggatgcctgcaggaagatc
agcctcgaggcccaggatctgacacgagagggcggtgccggtccgctcgtcgtatacccg
ctgtacggatcacttcctcctgcccagcagcagaagatcttcagcgcggcaccgcaaccg
ctgacaccaggcggacgtcccggccgcaaggtcatcgtgtctaccaacatcgccgagaca
tcgctcacgatcgacggcatcgtgtacgttgtcgaccctggcttcagcaagcagaaagtc
tacaacccgcgcatccgtgtcgagtctctccttgtttcgccaatctcaaaggcctctgcc
cagcagcgtgctggtcgtgccggtcgtacacggcccggaaagtgcttccgtctgtacacc
gagtccgccttcaagaaggagttgatcgagcagacgtaccctgaaatcctgcgctccaat
ttggcgagcacagttcttgagctcaagaagctgggtgtggatgatctagtgcacttcgat
ctgatggatccgcctgcaccggagacgctcatgcgtgcgctggaggagctcaactatctg
gcgtgtctcgacgatgagggtgagctgacaacactgggaaggctcgcctcggagtttcca
ctggaccctgcgctggctgtcatgctgatcacttcgcccgagttttactgctcgaacgag
atcctgtccctgaccgcgctcctctccgttccccaggtctttgtccgcccagcaaacaac
cgcaagcacgccgacgagatgaaggaactgttcgcgcaccccaagggcgaccacctcacc
atgcttaacgtctaccatgcgttcaagggcgaggacgcgcaagccaacccgaagcagtgg
tgccacgaccatttcctgtcctatcgtgcactgcagcaggctgacaatgtccgcatgcag
cttaagcggataatggagcgctccgaacttgagctcatgtcgacaccattcgagaacaag
aagtactacgagaacatccagcgtgcgctggttgcgggtttcttcatgcaggttgccaag
cgcgatggcaacggcaagcagtacactaccgtcaaggacgaacaaaccgtactgctgcat
ccaagcacggtgcttgctgaggacagcgaatgggttgtgtacaacgaattcgtcctgacg
accaagaactacatccgcaccgtgaccagcgtcaggccagagtggcttatggacatctcg
ccaaactactacgatctgtcgacgttcaagaagggtgacatcaagacggcgctgcaacgg
gcgtcgacaaagctactgcgcaaggaggccgagaaggggagaaggtga
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