Ascochyta rabiei: EKO05_0001758
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Entry
EKO05_0001758 CDS
T09445
Name
(RefSeq) RNA-binding protein, CCR4-NOT complex subunit Rcd1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0001758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0001758
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EKO05_0001758
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
62211287
NCBI-ProteinID:
XP_038802510
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All DBs
Position
2:join(2656284..2656743,2656793..2656948,2656995..2657370,2657423..2657606)
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AA seq
391 aa
AA seq
DB search
MQQMQHLFTQQQQQQQQQQHYPSEWSQGHHQHPNHHVAQHGQLQAQAQAAQAQAQAQAQA
AAAAAAAAQAQQQHYQRIAGNNGNAVSGNGIVPRGPANDMQANTEIGMTEENRRVLDWIA
QLMKPATRESALLELSKKREQVPELALILWHSFGVMASLLQEIISVYPLLNPSQLTAAAS
NRVCNALALLQCVASHTETRGLFLSAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIGALV
KNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLAYICQTYERFY
AVGTVLSNMVNQLVEQQTVRLLKHVVRCFLRLSDNARAREALRQCLPEPLRDATFSSVLR
DDAATKRCLAQLLINLSDNVVDAANNQQLLH
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaatgcaacacctcttcacgcagcagcagcagcagcagcagcagcagcagcac
tacccgagcgagtggtcgcagggtcaccaccagcaccccaaccaccatgtagctcagcac
ggccagctccaggcgcaggcacaggcggcgcaggcgcaggcgcaagctcaagcacaggcc
gccgccgccgccgcagccgcagcgcaggcccagcagcagcactaccaacggatcgcaggc
aacaacggaaacgccgtctctggtaacggcattgtgccccgcggccccgccaacgacatg
caggccaacacggagatcggcatgacggaggagaacagacgcgtgctcgactggatcgcg
cagctcatgaagccagccacgcgcgaatcagccctgctcgagctgagcaagaagcgcgag
caggtacccgagctggccctgatactctggcattccttcggcgtcatggcctccctcctg
caggagatcatctccgtctaccctctgctcaacccttcccagctgactgccgccgcctcg
aaccgcgtatgcaacgcgctcgcgctcctccaatgcgtggcttctcacaccgagacccgt
ggcctcttcctgagcgcacacatccctctcttcctgtacccattcctgaacaccacgtcc
aaatcgcgcccgttcgagtacctccgtttgacgtcgctcggcgtgatcggcgccctcgtt
aagaacgactcttccgaagtcatcaacttcctcctgacgaccgagatcatccccctttgc
ctccgcatcatggagacaggctcggagctgagcaagactgtcgccatcttcattgttcag
aagatcctgctcgacgacatcggtctcgcgtacatttgccagacgtacgagcgcttctac
gcagtcggcactgtgcttagcaacatggtcaaccaactcgtcgagcagcagacagtccgt
ctcctcaagcacgttgtccgttgtttcttacgtctgagcgacaacgctcgtgctcgcgag
gctctacgccaatgtctccccgagcccctccgggacgcgacgttctcgtcggtcctccgt
gacgatgcggctaccaaacgctgtctcgcgcaactgctgatcaacctctctgacaacgtg
gtggacgccgccaacaaccagcagctcttgcactag
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