KEGG   Ascochyta rabiei: EKO05_0001867
Entry
EKO05_0001867     CDS       T09445                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
arab  Ascochyta rabiei
Pathway
arab03018  RNA degradation
arab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EKO05_0001867
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EKO05_0001867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arab03019]
    EKO05_0001867
   03041 Spliceosome [BR:arab03041]
    EKO05_0001867
Messenger RNA biogenesis [BR:arab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EKO05_0001867
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EKO05_0001867
Spliceosome [BR:arab03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    EKO05_0001867
 Complex C
  U2 snRNP components
    EKO05_0001867
SSDB
Motif
Pfam: LSM Hfq SM-ATX
Other DBs
NCBI-GeneID: 62217657
NCBI-ProteinID: XP_038795334
LinkDB
Position
3:complement(join(667444..667578,667759..667906,668012..668025))
AA seq 98 aa
MLFFSFFKTLVEHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDEIRWPHLCSTKDM
FIRGSVVRYVHLPSGAVDTALLEDATRRETEAAKNKAK
NT seq 297 nt   +upstreamnt  +downstreamnt
atgcttttcttcagtttcttcaagactcttgtggagcacgaaatcaccgtagagctcaag
aacgaagtccagatccgcgggacactcaagagcgtcgatcagtacttgaacatcaagctg
gacaacgcagaggctgtcgatgagattaggtggccgcacttgtgctcgacaaaggacatg
ttcatccgtgggtccgtcgtaagatacgttcacttgccctcgggcgccgtcgataccgcg
cttctcgaggatgctacacggagagagactgaggcggcgaaaaacaaggcgaaatga

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