Ascochyta rabiei: EKO05_0001940
Help
Entry
EKO05_0001940 CDS
T09445
Name
(RefSeq) Subunit of heteropentameric Replication factor C (RF-C)
KO
K10755
replication factor C subunit 2/4
Organism
arab
Ascochyta rabiei
Pathway
arab03030
DNA replication
arab03410
Base excision repair
arab03420
Nucleotide excision repair
arab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKO05_0001940
03410 Base excision repair
EKO05_0001940
03420 Nucleotide excision repair
EKO05_0001940
03430 Mismatch repair
EKO05_0001940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arab03032
]
EKO05_0001940
03036 Chromosome and associated proteins [BR:
arab03036
]
EKO05_0001940
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0001940
DNA replication proteins [BR:
arab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
EKO05_0001940
DNA Replication Termination Factors
ELG1-RFC complex
EKO05_0001940
Chromosome and associated proteins [BR:
arab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
EKO05_0001940
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
EKO05_0001940
Check point factors
HRAD17(Rad24)-RFC complex
EKO05_0001940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
Rad17
AAA_22
AAA_11
RCF1-5-like_lid
AAA_16
RuvB_N
AAA_19
SLFN-g3_helicase
AAA_28
Mg_chelatase
AAA_assoc_2
AAA_7
AAA_24
AAA_5
DEAD
DUF815
ResIII
AAA_30
AAA_2
ATPase_2
bpMoxR
AAA_14
AAA_18
AAA_6
nSTAND3
DUF4863
RNA_helicase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
62217730
NCBI-ProteinID:
XP_038795407
LinkDB
All DBs
Position
3:complement(join(856761..857925,857979..858094))
Genome browser
AA seq
426 aa
AA seq
DB search
MADFFNLKARQQAAAVAGSSKAPGTKQQADRLQPWVEKYRPKTLSEVTAQDNTIQILSRT
LQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELIKSRVLELNASDERGISIVRQKVKD
FARQQLSSAPTHNVMTEDKDSAEGTKMVRYRDKHPCPPFKIIVLDEADSMTQDAQSALRR
TMETYSKMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRVDDIARLEGVALDTG
VSEELVRVADGDLRKAITFLQSAARLVGAMQTPRGTTGRKRKRIVDADGDDMDFDSDTTL
VDIPDNANTNTNTVSLQAIAEIAGVIPAATLTTFSDSLFPTSSARSIRYNEIARVVQNMI
AEGWSATQTVSQLYEHVMFDERVEDIKKVRLAAVFSETDKRLVDGGDEHLAVLDLGVRVA
GVLCGA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgacttcttcaacctcaaagcccggcaacaggccgctgccgtggccggttcctca
aaagcacccggtaccaagcaacaagcggaccggctgcaaccatgggtcgagaaataccgc
ccaaagactctctccgaagtcacagcacaggacaacacgatccaaatcctctcgcgcact
ctccaatcctccaatctcccgcacatgctcttctacgggccgccaggcaccggcaaaaca
tcgacgattctcgctctcgcaaaacagctctacgggcccgaactcatcaagtcacgcgtc
ctcgaactcaacgcctccgacgagcgcggcatcagcatcgtgcgccagaaagtcaaggac
tttgcgcgccagcagctcagctcggcgcccacacacaacgtcatgacggaggacaaggac
agcgccgagggcaccaagatggtacgctacagagacaagcacccgtgtccgccattcaag
atcattgtcctggacgaggcggacagcatgacgcaggacgcgcagtcggccctccgacga
accatggagacatacagcaagatgacgagattctgcctcgtgtgcaactacgtcacgcgc
atcatcgacccgctggcgtcgcgatgcagcaagttccgcttcaagagcctcgaccagggc
aacgccgtgaagcgcgtcgacgacattgcccggctcgagggcgtggcgctcgacacgggc
gtcagcgaagagctggtccgcgttgcagacggcgatctgcgcaaggcaatcaccttcctg
cagtcggctgcgcgcttggtaggcgccatgcagacgcccaggggcacgacgggccgcaag
cgtaaacgcatcgtggatgccgacggcgacgacatggacttcgactccgacaccaccctc
gtcgacatcccggacaacgccaacaccaacaccaacaccgtctccctgcaagccatcgcc
gagatcgcaggcgtcattcctgccgccacgctgaccaccttctcggactcgctgttcccc
acttcctcggcccgcagtatacggtacaacgagatcgccagggtggtgcagaacatgatt
gccgagggctggagcgcaacgcagacagtcagccagctgtacgagcacgtcatgttcgac
gagcgggtcgaggatatcaagaaagtgagattggccgccgtcttcagcgagacggacaag
aggcttgtggacggcggagacgagcatttggctgtgctggatctgggcgtcagggtcgcg
ggtgtcttgtgtggagcttga
DBGET
integrated database retrieval system
