Ascochyta rabiei: EKO05_0002320
Help
Entry
EKO05_0002320 CDS
T09445
Name
(RefSeq) uncharacterized protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
arab
Ascochyta rabiei
Pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0002320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arab03041
]
EKO05_0002320
Spliceosome [BR:
arab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
EKO05_0002320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
WDR54
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_SPT8
WD40_like
Beta-prop_WDR75_2nd
Nbas_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
62220235
NCBI-ProteinID:
XP_038792992
LinkDB
All DBs
Position
3:join(2233220..2233313,2233376..2234832)
Genome browser
AA seq
516 aa
AA seq
DB search
MSMHPARQAYVEEENGPSNSDPMDGIDYASVPLDRNHAMPGSGHDMASDMLAEFERKKRA
ANLIVPTADRDVKLRLRSLKEPITLFGEGPADRRDRLRALLAHAAEAGGDDAEDAVMEDA
EAPADEQEEFYTQGTQSLLDARRDMATYSLPRAKQRIAYQRQEAAIPLKAHVQHRDKVKH
TLKGFDLYGSQTADRPVSIVRVSPNGQYVAYGTWGGKVALLEIPSLEQKKAYRGGHTERA
TGIDWLPGATLPGSTVSSGSVNFASGGAGGKVQLWSLDDDKPLRTLEGHSDRVCRVAFHP
SARYLASASDDTTWRLWNVETGQELLTQEGHSKEVYTVTFNQDGSLLASAGLDSIGRVWD
VRTGRVIYMLESHIKPIYGLDWSTDGHRLLSGSGDGFIKCWDVRAMRESNSIAANTGGVT
DVRWYQGTDGPASGVPLQPNDEGEPVPKKASTFVVSSGFDKNIQIFSADDWAHCKTLRGH
SGPVFSTDVTSDAAWIVSGGKDRTVKLWSRDDNKGI
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgcacccggcgcggcaggcctacgtcgaggaggagaatggcccctccaattcc
gatcccatggacgggattgactacgccagcgtcccactggaccgcaaccatgccatgccc
ggctccggccacgacatggcctcggacatgctcgccgagttcgagcgcaagaaacgcgcc
gccaacctgatcgtgcccaccgccgaccgcgacgtgaagctgcgactgcgctcgctgaag
gagcccatcaccctcttcggcgaaggccccgccgaccgccgcgaccgtctgcgcgcgctg
ctggcacacgcagccgaggccggaggcgacgacgccgaggatgccgtcatggaagacgcc
gaagccccggccgacgagcaggaggagttctacacccagggcacgcagtcgctgctggac
gcgcgacgagacatggccacctactcgctcccgcgcgccaagcaacgcatcgcctaccag
cgccaggaggccgccataccgctgaaggcacacgtccaacaccgcgacaaggtcaagcac
accctgaagggcttcgacctgtacggatcacagaccgccgaccggcccgtcagcatcgtg
cgagtctcgcccaacggccagtacgtcgcatacggcacctggggcggcaaggtcgcgctg
ttggaaatccccagcctcgagcagaaaaaggcctaccgaggcgggcacacggagcgcgcc
accggcatagactggctgcccggcgcgacactgccaggcagcaccgtgtcgtcggggagc
gtcaactttgcttccggcggcgcagggggcaaggtgcagctctggtcgctggacgacgac
aagccactgcggacgctggagggccacagcgaccgtgtgtgccgtgtggccttccacccc
tccgcgcgctacctcgcctcggcctcggacgacaccacttggcggctctggaacgtcgag
accggacaggagctcctgacgcaagaaggccactccaaggaggtctacaccgtcaccttt
aaccaggacggctcgctgctcgccagcgccggcctggacagcattggccgcgtgtgggac
gtccgcacggggcgcgtcatctacatgctcgagagccacatcaagcccatctacggcctg
gactggagcacagacggccaccgactcctctcgggctctggagacggcttcatcaagtgc
tgggacgtacgagcgatgcgcgagtccaactccattgccgcaaacacgggcggtgtcaca
gacgtgcgatggtatcaaggcaccgacgggccggcaagcggcgtgccactgcagccaaac
gacgagggcgagcctgtgccgaagaaagcatcgacctttgtcgtgtcctcgggcttcgac
aagaacatacagatcttctcggccgacgactgggcccactgcaagacgctgcggggccac
tcgggccccgtcttcagcaccgacgtgacgagcgacgctgcgtggatcgtcagcggaggc
aaagaccggacggtgaagctctggtcgcgagacgacaacaaggggatatga
DBGET
integrated database retrieval system