Ascochyta rabiei: EKO05_0002854
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Entry
EKO05_0002854 CDS
T09445
Name
(RefSeq) Subunit of heteropentameric Replication factor C (RF-C)
KO
K10756
replication factor C subunit 3/5
Organism
arab
Ascochyta rabiei
Pathway
arab03030
DNA replication
arab03410
Base excision repair
arab03420
Nucleotide excision repair
arab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKO05_0002854
03410 Base excision repair
EKO05_0002854
03420 Nucleotide excision repair
EKO05_0002854
03430 Mismatch repair
EKO05_0002854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arab03032
]
EKO05_0002854
03036 Chromosome and associated proteins [BR:
arab03036
]
EKO05_0002854
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0002854
DNA replication proteins [BR:
arab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
EKO05_0002854
DNA Replication Termination Factors
ELG1-RFC complex
EKO05_0002854
Chromosome and associated proteins [BR:
arab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
EKO05_0002854
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
EKO05_0002854
Check point factors
HRAD17(Rad24)-RFC complex
EKO05_0002854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_assoc_2
AAA_22
AAA_30
AAA_11
AAA_5
Mg_chelatase
DUF815
RuvB_N
AAA_3
AAA_19
ResIII
AAA_14
SLFN-g3_helicase
PhoH
DEAD
Sigma54_activat
AAA_28
bpMoxR
AAA_18
ATPase_2
AAA_7
AAA_25
nSTAND3
RNA_helicase
NACHT
UvrD-helicase
IstB_IS21
DNAX_ATPase_lid
TniB
Motif
Other DBs
NCBI-GeneID:
62211680
NCBI-ProteinID:
XP_038801423
LinkDB
All DBs
Position
4:join(1253403..1253536,1253586..1254633)
Genome browser
AA seq
393 aa
AA seq
DB search
MSDIEDEMDVDAPVADTSISFGGDTKKGKRSAANLPVEAEDSLPWVEKYRPNSLADVEGH
QDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRG
IDVVREQIKTFSSTKQIFSAAPKPGDASLATFKLIILDEADAMTSTAQMALRRIMEKYTA
NTRFCIIANYTHKLSPALLSRCTRFRFSPLKERDIRNLVDKVVEDEKVNITQDATESLVT
LSKGDMRRALNVLQACHASSTPLQPPGQPAADPSTIVRDQITQTTIYDCIAAPHPSDVKF
ILDTLLSTNDMTQCLRTVNNLKTMKGLALADILTTVSEELVKNDVPPQVMVTWMSGLADI
EYRLSGGGSEAIQTGAAIGVVRTGVELMENGKK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatatcgaggatgagatggacgtcgacgcacctgttgcagacacctccatcagc
tttgggggagacacaaagaagggcaagagaagtgcggccaatctgcctgtcgaggccgaa
gactcgctaccatgggtggagaagtaccgaccgaattccctcgccgatgtcgaagggcac
caagacatcatagctaccatcaacaagttcgtcgactcgaaccgacttccacatctgctc
ctctacgggccaccaggcaccggcaagacatcaactgtcctcgccctcgcacgacgcata
tatggcaataagaacatgaggcagatggtcctggagctgaatgcatcagacgacagaggc
atcgacgtggtacgagagcagatcaagacctttagcagcacaaaacagatcttctcggcc
gcaccaaagccaggggatgcatcgcttgccaccttcaaactcatcatcttggacgaggcg
gacgccatgacttcgacagcgcagatggccctgcgacggatcatggagaagtacacagcc
aacacacgcttctgcatcatcgcaaactacacacataagctgtccccggcgctcctctct
cgatgcacccgtttccgcttctcgccactgaaggagcgagacatcaggaatctggtggac
aaggttgtcgaagacgagaaggtcaacatcacgcaagacgctacagagtcgctggtgacg
ctcagcaagggagacatgagacgagcgctcaacgtgttacaagcctgccatgcatctagc
acgcctttgcaaccacctgggcagcctgcagcagaccccagcaccatcgtacgagaccag
attacgcagacgaccatttacgattgcattgcagcaccgcacccttcagacgttaaattc
atactggacacactgctttcgacaaacgacatgacccagtgtctgcgcacagtcaacaac
ctgaagaccatgaaggggctggctttggcggacattctcactacagtgagtgaggagctg
gtcaagaatgacgtccctcctcaagtcatggtgacttggatgtcgggtctggcagacatc
gagtacagactcagcggaggaggcagcgaagccatacagacaggagccgccatcggtgtg
gtccggaccggcgtggagctaatggagaatggcaaaaagtga
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