Ascochyta rabiei: EKO05_0003028
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Entry
EKO05_0003028 CDS
T09445
Name
(RefSeq) THO2 plays a role in transcriptional elongation
KO
K12879
THO complex subunit 2
Organism
arab
Ascochyta rabiei
Pathway
arab03013
Nucleocytoplasmic transport
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0003028
09122 Translation
03013 Nucleocytoplasmic transport
EKO05_0003028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0003028
03041 Spliceosome [BR:
arab03041
]
EKO05_0003028
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
EKO05_0003028
Spliceosome [BR:
arab03041
]
Complex C
Other components
EJC/TREX
EKO05_0003028
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EKO05_0003028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
62211849
NCBI-ProteinID:
XP_059492058
LinkDB
All DBs
Position
4:complement(join(1815766..1817113,1817162..1817286,1817338..1822020))
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AA seq
2051 aa
AA seq
DB search
MAPGPKRKRGDRTFSYDDSPRPSPHRPQNLPLAHTQHQNSPRGGRGGGDRRQSRGGAGMG
GGGRGGYSVPQSPSVAYASPPARSPTVGAPHPPRPAQPAPSAPAPSAPAPSAPAPSNPAP
SKDPVSLPSAPTREVPESNEYLTPQRVAKWNNEARQAVVQAALTAQRKGDVFTLSVVFHE
IIEASMDRLLSSGELGSLVRDIVAAPPNESVDPVSTFLDTLSSLTENEHKQTLVRPMLMA
TDIDVGRMRSELDINLLKHLELVRGSFGKMAVRKATHALYRQSNYNLLREETEGYSKLMT
EYFTTVNSEPPSHEVVSETYQRVNALIGAFDLDIGRVLDVTLDVFANLLVKHGKFFVKLL
RCSAWWPEQRGLEGIEWEEPEVSTLPNWAQPESPLWYHSEEEKLQQLQLRERRDRKFWDR
VGELEASRAGKGIEVFFELGARRITANNRPRDEKIHAEGATLSDQQAARKWADDWMLQTG
TLPPSGNDTAAQLLGFKLQFYASDARDASDFLPDNLIHLAALLVKVGFISILDLYPHLYP
PESEMSAHKRKLIEAKREKEEKESGKDNALTLSVLSDDTIQGPPAVSRLREADKSTRPES
ESGTPGKPSEATDAKPPLPEPADQKYQLLKSLLCIGALPEALFILGLHPWLLEVYPDLLE
LMSRLAHHSISKVYEAARPISPEQIPVVTKGAVSRGLSRPSDFTPRRTLRWPKPDQKDAG
DGVDYRFYWEDWADNVPVCQDVDDVIKLCTTLLGLVGPECGKDTVLLTKIARIARKDFAN
NPSDANRQRWIRFSTTFLTPTLSFTGQNPGVVNEVWELLKQFDTATRFTIYEQWQVKGAS
KPIFRQFFKKVQHATSKELNKVTATNTKESGRRIAKISYSNPGIVFKNIVTRLISYPNMI
DALVECSKYITFLGYDVLTWTLVTTLTNPNKEGKKGDGMFAQGWLTNLSLFIGRAYQRYT
LLDPTPVLQYTTHQLLQSSGELYMLDVLEQMVKWMGGIAATGSLSESTVLSLSAGPVLRA
YTLQHNLADNRHQAVTSAKRLAKCLKDRDLAPQILVALAQHVEAFIHRDDQLDAPDKVVF
FNADKLHSNLFQYLEFLRAYFSEEDFDSAFPGLIEMISDYGVDPTIAFTICRASIAAKAN
SFRVEQQDRSSDTKNRSNSGDIAMGGAESTAVNSTATPSTAVGDGASSAPGDVEMNEAAK
TESEGVLVGTTMAGLSNPEIERVTEQLRAVLPESFADHPCLSFYVTFWQLSLPDVDQNGI
RDRYRETIQNWQQKAAPTHADRRYNSRIPKQDTPEQRRAKEEIAKLSKERDAVAKIAKAT
QDQLRVEMSKWFADVPMVGPRSDALHLALLQDCFIPRSRMSLHDAQYTSAMLHFMHSSGV
PGFRTIKLLDLLFSTNKLSCIIGMYSEEESKNFGRFLNDVLRELQKWHDNKHDAYVKFAY
GADRQLPGFGRKFDADRNPETHLDYNDFCQVSFKWHKALFSALKTCIESGKYTEVRNAIS
VLNAISSSFPKVDTMRDELQTPLEHIAKNDERDDLKISAQSTFRIFKQGKAHWRTEWQYR
NIPAPPEATNGASKADSQTPQPKDAPATKLNASAPVFKSRNESNNETPLPTDSPDDNAQK
RGSTPATSAVRPSDRDSSSQASTKEPDVRDSTPSQQERGDNTPVRGTPVPSAHASSGPSR
MDSRATPSQGPPMGRSSHALPIRPDSQPHRPRPSDRQSDYGPPHGRHDSRPPHNDYGRLE
RPSDPRDRPMPGGRTPERGPGPVERRDYGRDPREYDERAMRAPPREARGPPIRGPPQWEP
RDPREARDHRERLDHRGHPVVPVMEPRRTSSNSNLSQEYSSHQRDLPSSGRHQAPDRAEA
PISRQPPTNLSTATDGPAINPARAALIDPAVNPARAALINEAGPPRHESPRSDRDSRRER
GPRPQSPRRGDDRRGDDGGPPPQHVRHEIPYDHREERIPPHAPPSNRDRRDEMSVNSTPT
GPRRPQNESVRTEMPGSSRGSREMFQPSQSSRQSYVQAQDPNYGRLNAPSEPVPSGPRGQ
SSAQNHWPPLT
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atggctcctggtccgaaacgaaagcgtggcgaccgcaccttctcctacgacgatagcccg
cgaccgtcgccgcaccgaccacagaatctaccactcgcgcatactcaacaccagaacagc
ccacgtggcggacgaggaggtggagacaggcggcaaagcaggggaggagcggggatgggc
ggaggaggccgtggcggttacagcgtaccacaaagtcccagcgtcgcgtatgcttctcca
ccagccagatccccaacagtaggcgcaccccatccgcctagacctgctcagccggcgcca
tctgctccggcgccatctgctccggcgccatctgctccggcaccatctaatccagcacca
tccaaggacccagtctctctgccctcagcgccgacgcgcgaagtaccagagagcaacgag
tacctgacgccccaacgcgttgccaaatggaacaatgaagcacgacaagcagttgtccaa
gctgcgctgacggcccagcgtaaaggcgatgtctttacgctatccgtcgtattccacgag
atcatcgaggcgtcgatggatcgcctgttgagctcaggcgagctgggatcgttggttcga
gacattgtcgctgcacccccaaacgagtcggtagaccccgtatccaccttcctcgacacg
ctcagctccttgacagagaacgaacacaagcagactttggtacggcctatgctcatggca
acggatatcgatgtcgggcgaatgcgctccgaactcgatatcaacttactgaaacatctt
gagctggtccgtggaagcttcgggaagatggccgtccgcaaagccacacacgctctctac
cgccaatcgaattacaatctccttcgcgaagagaccgagggctattcgaagctcatgacc
gaatactttactacagtcaacagcgagccaccgagtcacgaagtcgttagtgaaacatac
cagcgagtgaatgctctcattggcgcattcgacttggacattggcagagttctcgacgtg
acactcgatgtctttgccaatttactcgtcaagcatggaaagttcttcgtcaagctactt
cgctgcagcgcatggtggccagagcagcggggactggagggtatcgagtgggaggagccg
gaagtatcgacacttccaaactgggcccaaccagaatcaccgttgtggtatcactctgag
gaggagaagcttcaacaactgcagctacgtgaacgccgagaccgcaagttttgggaccgt
gttggagagctcgaagcttcacgagccgggaagggcatcgaggtctttttcgagcttggc
gctcgacgtatcactgcgaacaacaggccgagagacgagaaaatccatgcagagggcgct
actctttccgatcaacaagctgcacggaaatgggcagatgactggatgttgcaaaccggg
acattgccgccttcgggtaatgataccgctgctcagcttcttggcttcaagttgcaattc
tacgcgtctgatgctcgcgacgcatcagatttcctccccgacaacctaatccacctggct
gcccttctcgtcaaagtgggatttatctcgattctagatctttatccacatctgtatcca
ccagagagcgaaatgtccgctcacaaacggaagctgatagaagctaagagggagaaggaa
gagaaggagagcggaaaagacaatgcattgacactgtcagtgctctcggacgacactata
caaggaccgcctgccgtaagccgcctcagagaagccgacaaatccacaaggcccgagtct
gagagcggcactcctggaaaacccagcgaagccacagatgcgaagcccccactgccagag
ccagctgatcagaagtaccaacttcttaaaagtttgctctgcattggcgctttgcctgaa
gccttgtttatccttggcctccatccttggttactggaggtctacccggacctacttgaa
cttatgtctcgtctagcccatcactcaatcagcaaagtctacgaagcagcaaggcctatc
tccccagagcagattccagtcgtaacaaaaggcgccgtttctcgaggcctttcccgccca
agcgatttcacaccccgacgaacacttcgatggcctaaaccagatcagaaagatgcaggc
gatggtgtcgattatcgattctactgggaagactgggctgacaatgtacctgtttgccaa
gacgtcgacgacgtgatcaaactgtgtaccaccttgcttgggttggtaggccccgagtgc
ggcaaagatactgttcttttgacaaaaatcgcacgcatagcgagaaaagactttgcaaat
aacccatcagatgcaaaccgacagcgctggatcagattctcgacaactttcctcactcca
acgctctctttcactggtcagaacccgggtgtcgtgaatgaagtatgggagcttctcaag
cagttcgacaccgcaacacgctttaccatatacgaacaatggcaagtcaagggagccagc
aaaccaatcttcagacagttcttcaaaaaggtgcaacacgcaacgagtaaggaattgaac
aaagtcacggctacaaacaccaaggagtccggacgcaggattgccaagatttcttattcc
aatcctggaatcgtcttcaagaacattgtcacgcgacttattagctatccaaatatgatc
gacgcccttgtggagtgcagcaaatacatcaccttcctcgggtatgacgttctgacttgg
accctcgttaccaccctcacgaatcctaacaaagaaggaaaaaagggcgatggcatgttc
gcccaaggctggcttaccaacctgtctttgttcattggcagagcctaccagagatacacc
ctgctggatccgaccccggttttgcaatacacgacacaccagcttctacaatcttcgggt
gagctgtacatgctcgacgtcctcgagcagatggttaaatggatgggtggtatcgcagcc
accggctcactctcggaatccaccgtcctttcgttgagtgcagggccagtccttcgcgca
tacaccctgcagcacaaccttgcggacaatcgtcatcaggctgttacctcggccaagcga
ttagcaaaatgcctgaaggacagagacctggcgccgcagattctggtcgcgctggcacag
catgtcgaggctttcattcatcgcgatgatcagcttgatgctcctgacaaagtggtcttc
ttcaacgctgataaactgcattcgaacctctttcaatatctcgaattccttcgcgcctac
ttctcggaggaagatttcgacagcgctttcccaggtttgatcgaaatgatctctgattat
ggcgtggacccaactattgctttcaccatttgccgtgcaagcatagctgcgaaagcaaac
tctttcagggttgagcaacaagacaggtcttcagataccaaaaaccggagcaacagtgga
gacatcgcaatgggaggagcagagagcacagcagtcaacagcactgctactccctctacc
gctgtaggcgatggtgcctctagtgcgcctggagatgttgagatgaacgaggccgctaag
actgaatccgagggcgttttggtgggaacgactatggccggtctttcgaatcccgagatc
gaaagagtaacggaacagttgagagcagtactgcccgagtcttttgcagatcatccttgc
ctgtcgttctatgtcacattctggcaattgtctcttcccgacgtcgatcagaatggtatt
agagatcgataccgcgagacgatccagaattggcaacaaaaagccgcccctacgcacgca
gaccgtcgatacaactcgcgcattcctaagcaggacacgccagaacagcgacgcgcaaaa
gaagagatcgcgaagctaagcaaggagcgagacgctgttgcgaagatcgccaaggctact
caggatcagttgcgggtcgaaatgagcaagtggttcgcagacgtgcctatggtcggtcct
cgatctgacgctcttcacttggccctgttgcaggactgcttcatcccccgcagccgcatg
tctctgcacgatgcgcaatacacttccgctatgctacatttcatgcacagctctggagtg
cctgggttccgtacaatcaagctgctcgaccttctcttttccaccaacaagctcagctgt
atcatcggcatgtactcggaagaagagtcgaaaaacttcggtcggtttctcaatgatgtt
cttcgagagcttcagaagtggcatgacaacaagcacgatgcctatgtcaagttcgcgtac
ggcgcggataggcaattgcctggatttggcagaaagtttgatgccgatcgcaacccagag
actcatcttgactacaatgacttctgtcaagtgtccttcaagtggcacaaggctttgttc
agcgcgctcaagacttgcattgaaagcggcaagtacacagaggttcgcaatgcgatcagt
gtgttgaacgccatctcttcaagctttcctaaggttgacaccatgcgtgacgagctccaa
acaccactggagcacattgctaaaaacgacgaaagggatgaccttaagatctccgcgcaa
tcgacattccggatattcaagcaaggcaaagctcactggcggacagaatggcagtaccgt
aatattcctgccccaccggaagccaccaacggcgccagcaaagccgactctcagacaccg
caaccgaaagacgctcctgcaacaaagcttaacgccagcgcgcctgtgttcaagtccaga
aacgaatcaaacaatgagacgccactacctacagacagccccgacgacaacgcccagaag
cgaggttcaacgccagcaacatcagcagttcgtcctagcgatagggactcttcttctcag
gcaagtaccaaagagcctgatgttagggactctactccatcgcagcaagagcggggtgac
aatacacctgttaggggcacacctgtcccatctgcccatgcctcttccggaccttctcga
atggacagcagggccacgccgagccaaggccctccaatgggcagatcctctcatgctttg
cccattagaccagattctcaacctcacagacctcgcccctctgaccgtcagtccgattac
ggccctccccatggccgacacgacagccggccgcctcataacgactatgggcgtcttgag
cgcccgagcgatcctcgcgaccgacctatgcctggtggcagaacccctgagaggggcccc
ggtcctgtagaacgccgtgattatggcagagaccctagggagtacgatgagcgagccatg
cgagcgccgccaagggaagctaggggtccccctatccgtgggcctcctcagtgggagcct
agagatccgagagaagccagagaccatcgagagcgactcgaccaccgggggcatcctgtg
gtacctgtcatggagcccagaaggacatcctcaaactcaaacctgtcgcaagagtactcc
tcgcaccaacgtgacttgccgtcgtctggcaggcaccaagccccggacagggcagaagca
ccaatctcgcgacaaccgcctaccaatctgtcgacagccaccgatggccctgcaatcaat
ccggctcgtgcagctttgatagatcctgcagtcaatccagcgcgtgctgctctaatcaac
gaagcgggacctcccaggcacgagtcccctcgatctgaccgcgacagccgtcgcgagaga
ggaccgcgtccgcagtctcctagaaggggagatgatcgtcgtggggacgatggcggcccg
ccacctcaacacgtccgtcacgaaattccttatgatcatcgggaggagcgaatacctccc
cacgcacccccttcgaatcgtgaccgccgggacgaaatgagtgtcaacagcacgcctacg
ggtcctcgtaggccgcagaatgagtctgttcggactgagatgccgggttcgtctcgcggt
tctcgcgagatgttccagccttcacagtcttcacgccaatcgtacgttcaagcgcaggac
cccaactacggtaggcttaatgcgccttccgaacccgtcccttctgggccgcgtggtcag
tcctctgcccaaaatcattggcctccactgacgtag
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integrated database retrieval system
