Ascochyta rabiei: EKO05_0003579
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Entry
EKO05_0003579 CDS
T09445
Name
(RefSeq) FG-nucleoporin nsp1
KO
K14306
nuclear pore complex protein Nup62
Organism
arab
Ascochyta rabiei
Pathway
arab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EKO05_0003579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0003579
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
EKO05_0003579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
BRE1
ATG16
hDGE_amylase
OmpH
Peptidase_S64
WXG100
Syntaxin_2
NET2A
COG4_N
Motif
Other DBs
NCBI-GeneID:
62212341
NCBI-ProteinID:
XP_038800695
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All DBs
Position
5:complement(join(1255344..1255559,1255636..1255759,1255811..1257149,1257210..1257630))
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AA seq
699 aa
AA seq
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MSGFTFGQPSGNNAGSNAPKPAGGLFGGAGNTTGSSSPSLFGTANTGSSAPSTGGLFGGG
GGSAVGAGLFGGGASNTPAASKPAGGLFGGGATAGASSTPSFGFGSAAKTGDAAKPTMFG
GASTGAAPAASPGTTSSFGFGSTPTATPATNKTSFLPSTTPAGPPPGSNLFGGQTPAASS
GFSLGGGQNNQTGASSSGSGLFGGAAKPAVPTAGSTPGLFGAKPAGASTPTTGLFGGAPG
SNDANKSATPPTPAGLFGGAAPTASSSSQETPKPAGGLFGGGLPSTTPASKPPTFSLGGS
TPAAQPAASQPSATPSLGGFSLGGGDKDKTATSSAAPTSGLFGAAASSTPSAPAAGGNTG
LNLFKKPEASTPSSSTPASGAAPAATSSAPSMFGGMGGGSSAPPASSAAAPTSAATPGLF
GGLGGAKPASTTAPASTPAQPTPSRGATPAPSGDANKSGLANSTAGPAPSAQSRLKNKSM
DEIITRWAADLSKYQKEFQSQAETVAQWDRALVENSDKVRQLYSKTFQAERDAAEVERQL
TMMEENQQELDSYLDRYEKEIENLMKMHGVSGRSDGLRGPDQERERTYKLAEKLQDRLNE
LNKDLTEMIEEINSTSQTLSKTGKPDDPLTKVVRVLNTQLSQLQLIDSGASQLQDKINQA
QKESRSLGANGWNGLGTDPAEDFYRSFRGNRVERYGGHA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcttcacattcggacagccgagcggcaacaacgctggctccaacgcgccaaaa
ccggcgggtggattgtttggcggtgcaggaaacacgaccggcagctcgtccccctccctc
ttcggcaccgccaacactggatcgagcgcaccgagcacaggaggactgtttggcggcggc
ggaggaagcgctgtaggcgcaggtctctttggcggcggagcatctaacacaccggcggcg
agcaagcctgcgggaggcctctttggcggtggagctacagcaggcgcatcttcgacacca
agctttggcttcggcagtgcagcaaagacgggtgacgcagcaaagccaacgatgtttggc
ggtgcttcaactggggctgcaccagctgcttcccccggcaccacctcgtcatttggattc
ggctcaacacccactgccacccccgccacaaacaagacatctttccttccctcaacgaca
cccgctggtcctcccccaggctccaacctgttcggtggacagacacctgcggcctcatct
ggcttttccctaggaggaggacaaaacaaccagactggtgcgagctcgtcggggtcaggc
ttgttcgggggagccgcgaagcctgctgtgccaacagctggatcaacgcctggcttgttt
ggagccaaacctgcaggtgcttccacacccaccacaggtctttttggaggcgcgcccggc
tccaacgacgcgaacaagagcgcaacccctccgaccccagccggattgttcggtggagcc
gctcctacagcttcttccagctcgcaagagactcctaaaccagcaggaggactgttcggt
ggtggcctgcctagcacgacacccgcaagcaagccccctacattcagccttggaggatcc
acacctgctgcccagccagcggcctcgcaaccatccgcaacgccttcgctgggaggcttc
agcttaggtggcggagacaaggacaagactgcgacttcatcagcagcgccaacatccggc
ctgtttggcgcggctgcatcgtctacaccaagtgcgcccgcagctggcggcaacactggc
ctcaacctcttcaagaagcctgaagcgagcacaccttccagctcgacaccagcaagtgga
gccgcaccagctgcgacaagctcggctccgtccatgttcggcggtatgggaggtggaagc
tctgcgcctccagcttcgtctgcagcggcgccaacatcagccgcaacgccaggtcttttc
gggggcctgggtggagcaaagcccgcctcgaccacagcaccagcttcgacacctgcgcag
cccactccatcacggggggctacgcctgcaccttctggcgatgctaacaagagcgggctt
gccaactcgacagcgggtccagcaccctccgctcagtcacgcctcaagaacaagtccatg
gacgagatcatcacacgatgggccgccgatctctccaagtaccaaaaggagttccaatcg
caagctgagactgtcgcacagtgggaccgagccctcgtcgagaactctgacaaagtccgc
cagctgtactcgaagaccttccaagccgagcgcgacgcagcagaggtagagaggcaactg
accatgatggaggagaaccagcaagagctcgactcgtacctcgaccgatacgaaaaggag
attgagaacctcatgaagatgcacggtgtttccggcaggtctgatggtctacggggccct
gatcaggagcgcgagaggacctacaaactcgccgagaagctgcaagaccgcctcaacgag
ctgaacaaagacctcacggagatgattgaggaaatcaacagcacatcccaaaccctcagc
aaaacaggcaagcccgacgaccccctcacaaaagtcgtccgcgttctcaacacccagctg
tcgcagctccagcttatcgactcgggcgcctcgcagctgcaggacaagatcaaccaggcg
caaaaggagagtcgctccctgggcgccaatggctggaacggtctcggcaccgatcccgca
gaggacttttatcgcagtttccgcgggaacagagtcgagcggtatggggggcatgcgtag
DBGET
integrated database retrieval system
