Ascochyta rabiei: EKO05_0003642
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Entry
EKO05_0003642 CDS
T09445
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
arab
Ascochyta rabiei
Pathway
arab03020
RNA polymerase
arab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EKO05_0003642
09124 Replication and repair
03420 Nucleotide excision repair
EKO05_0003642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arab03021
]
EKO05_0003642
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0003642
Enzymes [BR:
arab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EKO05_0003642
Transcription machinery [BR:
arab03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EKO05_0003642
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EKO05_0003642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
62212282
NCBI-ProteinID:
XP_038800636
LinkDB
All DBs
Position
5:join(1448504..1452120,1452174..1452339)
Genome browser
AA seq
1260 aa
AA seq
DB search
MADQYTDDFAMEEYEDEEDDGAITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDI
VKENGSVILEQNTPYNPDEDVDPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARL
RNLTYSGAMLADIENRIMVARETTAPAEDDDDEVEGQGGGVTQIRWDREDIPMDSDESAR
VFIGKLPVMLRSELCHLRGQNDEALFGLNECPYDQGGYFVINGSEKVLIAQERSAANIVQ
VFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASGKRMPGPFAYATLPYIKADV
PMAIVFRALGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGSVVQDRESALDFIAKRGAT
QGTKDRRLKFAKDIMQREFLPHISQREGQDTRKAYFFGYMIHRMLQCVLGRRDEDDRDHF
GKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSL
ATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGL
VCPAETPEGQACGLVKNLSLMCYVSVGSDAGPISDFMSQRNMQLLEEYDQNQNPDATKVF
VNGVWVGVHSNAQQLVSTVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVE
SDVRKPNRNHLVFSQSHYNKLVEEQQAQAAAGVGEEEKTELTYGWKGLIQDGVIEYLDAE
EEETAMIVMSPEDLGEWRDMKMGIPQDARNPQGKDRLARIKPKPDPRIHAYTHCEIHPAM
ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTR
SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIG
VNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEMGQ
KTSLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK
GTIGITYRQEDMPFTRDGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGREGDATPF
TDVTVDQISELLEEAGYQKRGLEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARA
RGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICG
LMSPIAQLKQGKYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTTRSGLSVRD
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaatacacggacgacttcgcgatggaggagtacgaagacgaagaggatgat
ggagccatcacctctgaggactgctgggccgtcatcagctcgttcttcgacacaaagggc
ctggtttcgcagcagctggactcgtacgacgaatttacacgcaacacaatacaagacata
gtcaaggagaacggcagcgtcatcctcgagcagaacacgccctacaacccagacgaggac
gtcgaccccatcatcaagcgccgctacgagatcaagttcggccgcgtgtacctggcgcgg
cccacccacaccgaaggcgatggcacaaccgtgcagctctacccgcacgaggcacgtctg
cgcaacctcacctactccggtgccatgctggcagacatcgagaaccgcatcatggtcgcc
cgcgagaccacggcacctgccgaagacgacgatgacgaggtcgagggccaaggaggcggt
gttacacagattaggtgggaccgcgaagatatccccatggacagcgatgagtcggcacgc
gtcttcataggaaagctgcctgtcatgctgcgctcagaactctgccatctgcgtgggcaa
aacgatgaggcgctctttggcctcaacgagtgcccctacgaccagggtggctacttcgtt
atcaacggcagtgaaaaggtcctgatcgcacaagaacgcagtgctgcgaacatcgttcag
gtcttccgaaagaagcagggtcccattccttggatcgccgagattagaagtgctgtcgaa
aagggaacgcgccttatttcctcgttcaacatcaagtgggctgagaactcgctggctagc
ggcaagcgtatgcctggaccttttgcatacgccacactcccctacatcaaggccgatgtt
cccatggccattgtcttccgtgcgcttggtatcgtttccgacgaggagatcctcggacac
attgtatacgaccgcacagatacccagatgctggagctgctcaagcccagcatcgaggaa
ggttccgtggtgcaggaccgcgagtccgcgctcgacttcatcgccaagcgtggagccaca
caaggaacaaaagacaggcgtctcaagttcgccaaggatatcatgcagcgcgagttcctg
cctcacatctcgcagagagaaggacaggatactcgcaaagcctacttctttggttacatg
atccaccgcatgttgcagtgtgtcctgggtcgccgagatgaggacgatcgtgaccacttt
ggaaagaagcgtctcgatcttgcagggccgctgattgcgaacttgttccgcattctcttc
ctgaagttgaccaaggacgtctataaatacctccagaggtgcgtcgagaacaaccaagac
ttcaacgtgcagatggctgtcaaggccagcattatcaccaacggcctcaagtactctctc
gctacgggaaactggggtgatcagaagaaagcagcgtccgcaaaggctggtgtctcgcag
gtgttgaaccgatacacctacgcttcaacattgtcccatttgcgtcgaacaaacacacca
gttggtcgtgacggcaagcttgcaaagccccgtcaattgcacaacagtcattggggtctt
gtctgccctgccgagacacctgaaggacaggcctgcggtctggtcaagaacttgtctttg
atgtgctacgtcagtgttggtagcgacgctgggccaatctccgacttcatgagccaaagg
aacatgcagctcctcgaggagtacgaccagaatcagaaccctgatgctaccaaagtcttc
gttaacggtgtgtgggtcggtgtccactccaacgcacagcagcttgtatcaaccgtgcaa
gaactgcgacgaaacgggacactgtcttacgagatgagtttgattcgtgatatccgtgac
cgagagttcaagatcttcactgatgctggacgtgtcatgagacccttgttcgtcgttgag
agcgacgttcgcaagcccaatcgcaatcaccttgtcttcagccagagccactacaacaag
ctggtcgaagaacagcaagcgcaagctgcggcaggtgttggtgaggaagagaagaccgag
ctcacgtacggctggaaggggcttatccaggacggagtcattgaatatctcgatgctgaa
gaagaagagactgccatgattgtcatgtcgcccgaggatctcggcgagtggcgcgacatg
aagatgggtatcccacaagatgctcgcaaccctcaaggaaaggaccgtcttgcacgtatc
aagcccaagccagatcctcgcattcacgcctacacgcattgcgagattcatcctgccatg
attcttggtatctgtgccagtatcatccccttcccggatcacaaccagtcgccccgtaac
acgtaccaatccgctatgggtaagcaagccatgggtgtcgctctgaccaactacgctctc
cgtatggaaaccatgatgaacgtcctttattatccccaaaagccacttgccacaacacgg
tctatggagtacctcaagttccgtgagctgcccgctggacagaatgctattgttgccatt
gcctgttactccggttacaatcaggaagattccgtcattatgaaccagagcagtatcgat
cgtggactcttcaggtctctgttttaccgagcatataccgagcaggagaagagaattggt
gtcaacgttctggaacagttcgagaagccaacacgtgcagacaccctgaggctcaaaggt
ggtacttatgacaagctcgacgacgatggtgttgttgcgcctggtgtgcgtgtctctggt
gacgacatcatcatcggtaagactgcacccatcgccgctgatgctcaggagatgggacag
aagacatcgctgcacacaaagcgtgatgtgtctactcctcttcgtagcacagaaaacggt
atcgttgatcaggttcttttcaccaccaacactgaaggtctgcgattcgtcaaggtccgt
acacgaacaaccaaggtgccgcagattggtgacaaattcgcgtctcgtcacggacagaag
ggaaccatcggtattacctacaggcaagaggacatgcccttcacaagagacggtctcacc
cccgaccttgttatcaaccctcacgccattccatctcgtatgacgattgcccatttggtc
gagtgtctgctgtccaaagtcggtgccatcaccggacgcgaaggtgatgctacgcctttc
actgatgtcaccgttgatcagatctctgagttgcttgaagaggccggctaccagaagcgt
ggcctcgaaatcatgtacaacggacacactggcaagaagatgcgcacacagatcttcttg
ggtcccacctactaccagcgcctgaggcatatggtcgacgacaagatccacgcgcgtgcc
cgtggtcccctccagattctgactcgccagcctgtcgaaggtcgtgctagggatggtggt
ctgcgtttcggagaaatggagcgtgattgtatgatcgctcatggtgctgctgcttttctc
aaggagcgtctattcacagtctcggatgcgtacacggttcacgtctgcgacatctgtggt
ctgatgagccctattgcccaactcaagcaaggcaaatacgaatgccgtccctgccacaac
aagacgcgcatctcgcaaatccacatcccttacgccgctaagcttctcttccaggaactc
ctcgctatgaatatcgccactcgcatgttcaccactcgttccggcctcagtgtccgcgac
tag
DBGET
integrated database retrieval system
