Ascochyta rabiei: EKO05_0004811
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Entry
EKO05_0004811 CDS
T09445
Name
(RefSeq) Antiviral helicase ski2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0004811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0004811
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKO05_0004811
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
EKO05_0004811
mRNA degradation factors
3'-5' decay
Ski complex
EKO05_0004811
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
ResIII
DEXQc_Suv3
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
62213566
NCBI-ProteinID:
XP_038799359
LinkDB
All DBs
Position
7:join(743579..746761,746811..746990,747044..747510,747611..747644)
Genome browser
AA seq
1287 aa
AA seq
DB search
MEALSGELEKLRLGYNAADDNKSWIDSIADEQRPPKRQRKTKEVIKQELEHDFLTPSRSF
NTQWLNQLQQRWDTPTNYYGLFQIAPTQTRTIIRFTREGLEGRVTGYKEVTVPANSATAK
NSTSLLRKPANRAEFVRGAAGFFPFAPGGLDGVEAIAAIEDEAILRHEGAAEKRAGGLDR
VINFSAEGGLLEIPPGFTRGLDFKQKPATDSKTAKEVEETLGEAAAPVEDVEVDDDEAAD
ATETNGVEALNLDGQTPGEEEIDALLPVEFPALAPHTQLAMANRKGGREWAHMVDVNRDI
TNFKELVPEMAREYPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAISLAAKHM
TKAIYTSPIKALSNQKFRDFRQTFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADL
IRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKK
DIYVISTPKRPIPLEHYLWAGKGMHKIVSADKKFIDNGWKDANDALSGKDKVKAPPVVKD
SPAGRGGGGRGGPPARGGQNQRGRGQLNGARGGAGGRGAGPPAARGRGNIARTGRGGGRT
TAAQDRNIWVHLIQHLRQKELLPACIFVFSKKRCEENADALSNIDYCTAAEKSAIHMTIE
KSLARLSPEDRDLPQIKKLRELLSRGIAVHHGGMLPIVKEVVEILFAKTLVKVLFATETF
AMGLNLPTRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRGLDTVGTVIICAPGADEA
PPAARLRQMMLGEPTKLRSQFRLTYNMMLNLLRVEALKIEEMIKRSFSENATQALLPEHE
KKVKVSEADLEKIKREPCRICDVDLEACHQACEDYKRLTNETHLSLLGNPMGRRVFSKNR
LIVYKKDNKRTVGMLLQDGPSKGHEPTVKVLEIAQNLERKPDDLLPYIAEFARFFRNLPQ
DPKEMILKTSYIPLNDVECFTKTTIDIPESVQNLSKKKDMMKLAQAQFTPLCSSWNYEDW
DEYDYSRIKNLAFRETQDARRKRGQNAVNKECLPCPNFLKHFSMEHDQWVIKENILAIRQ
LMSDQNLQLLPDYEQRIQVLRELGFVDEGSRVELKGKVACEIHSADELVLTELVLENVLA
EYEPEEIVALLSAFVFQEKTDTEPTLTASLERGVAKIVEISEKVNKVQTEYQVILSADDS
NDFVSKPRFGMVEVVYEWARGMSFNRITDLTDVMEGTIVRVITRLDETCREVKNAARIIG
DPALFQKMGTCQELIKRDICNCASLYL
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgctttctggagaactggaaaagttgcgcctgggctataatgcagcagatgac
aataaaagctggatagattccatcgcagatgaacaacgaccgcccaaacgacagaggaaa
accaaagaagtcatcaaacaagaactggaacatgacttcttaaccccctcgcgatcattc
aatacacagtggttgaatcagttgcagcaacgatgggatacaccgactaattactatggc
ttgttccagatcgccccaactcaaacccgcacaatcatccgcttcactcgcgagggtctc
gaaggtcgcgtcacgggctacaaggaagttacggtacccgcgaactcagctactgccaaa
aactcaacatcactgttgagaaagcctgccaaccgagccgagttcgttcgtggtgcagca
ggcttcttcccgtttgcgccaggaggtcttgacggcgtcgaggccatcgccgccatcgag
gatgaggcaatcctccgacacgaaggtgccgctgagaagagggctggaggactcgatcga
gtaatcaatttcagcgccgagggtggtctcctggaaattcctccaggattcacgcgtgga
ttagacttcaaacagaagccagctacggatagtaagactgccaaagaggtggaagaaacg
ctcggcgaagcagcagctccagtcgaagatgtcgaagtagacgatgatgaggctgcagac
gcaactgagaccaacggagttgaagcgctaaatttggatggtcaaactcccggagaagaa
gagattgatgcgctgctacctgtagaattccctgctctggcacctcacactcagcttgct
atggccaacaggaaaggcggacgagagtgggctcacatggttgacgtcaatcgagacatc
acaaacttcaaagagcttgtgccagagatggcacgcgagtatcctttcgaactggatact
ttccagaaagaagctgtctatcacctcgagaacggtgactcggtctttgttgcagcccac
acatctgctggtaagacggttgtcgcagagtacgctatctcacttgccgcaaaacatatg
actaaggccatatacacgtcacccattaaagccttgagtaaccagaagttccgtgatttc
cgccagaccttcgacgatgtcggcatcctcactggggacgttcaaatccgacctgaggct
agctgccttatcatgactacagagattctccgaagtatgttgtaccgtggagctgatctg
atcagagatgtcgaattcgtcatcttcgatgaggtccactacgtcaatgacctcgaacga
ggtgtagtctgggaagaggtcatcatcatgcttcccgagcatgtcacactcattcttctt
tcagccaccgtacccaacacttacgaatttgcttcatgggttggacgaacgaagaagaag
gatatatacgttatctcaacacctaagcgtcctattccccttgagcattacctttgggca
ggcaagggaatgcacaagattgtctcagcggacaaaaagttcatcgacaacggttggaaa
gacgccaacgatgcactctctgggaaggacaaggttaaggcaccgccagttgttaaggat
tcaccagcaggaagaggaggtggaggccgtggaggcccgcctgcaaggggtggacagaac
cagcgcggacgaggccagctaaatggtgcacgtggtggtgctggtggtcgtggtgcaggc
ccaccagctgccaggggtcggggcaacattgctagaacgggccgcggtggaggccgtaca
acggccgctcaagatcgaaacatctgggtccacctcatccagcatctgcgccagaaagag
ctactcccagcttgtatcttcgtgttctcaaagaagcgatgtgaggagaacgctgacgcg
ctttccaatatcgactattgcacagctgcagagaagagtgctattcatatgaccatcgaa
aagtccctggccaggctaagtcccgaagatcgggacttgccgcagatcaagaaactgagg
gaactgctcagccgaggcatcgccgttcatcacggtggtatgttgcctatcgtcaaagag
gtcgtagagatcttgttcgcaaagactcttgtaaaagtgctttttgctaccgaaaccttt
gctatgggcctcaatctaccaacaaggactgtggtcttctcaggatttcgtaagcacgat
ggtcgtgaattccgcgaccttcttcccggcgaatatacacaaatggctggtcgtgctggc
cgaagaggtctcgacactgtcggcacagtcatcatctgcgcaccaggagctgatgaagca
ccgccggcagctaggcttaggcaaatgatgttgggtgagccaacgaagctgcgatcgcag
ttcaggctcacatacaacatgatgctgaaccttcttcgcgtcgaagcgctaaagatcgag
gagatgatcaagcgcagcttcagtgagaatgctactcaagcgctgttgccagaacacgag
aagaaagtcaaggtttcggaggcagatttagagaagatcaagcgcgagccctgcagaatt
tgtgatgtcgatttggaagcatgtcaccaggcatgcgaagattacaagcgcttgacgaac
gagacgcacttgagtcttcttggcaatcccatgggacgtcgtgtgtttagcaagaaccgc
ctgattgtctataagaaggacaacaagcgcaccgtgggtatgcttctccaggatggaccg
agcaaaggacatgagcctactgtcaaggttttggaaattgcgcaaaaccttgagcgtaag
cctgacgatctgctcccctacattgccgaattcgcaagatttttccgcaacttgccacag
gacccgaaggaaatgatcttgaagacatcgtacatacccctcaatgatgtcgaatgcttc
accaagaccaccattgatattccggaatctgtgcagaatcttagcaagaagaaggatatg
atgaagttggcgcaagctcagttcacccctctctgcagctcttggaactacgaggattgg
gatgagtatgactatagccggatcaagaacctcgctttccgggagacacaagacgcacga
cggaagcgaggtcagaacgccgtcaacaaggagtgcctaccatgccccaattttttgaag
cacttttcaatggagcacgatcagtgggtgatcaaggagaacattcttgctatccgccag
ctcatgtctgaccaaaacctccaattgctacctgactacgaacagaggatacaggtgttg
cgagagcttggcttcgtcgatgaaggctcgcgagtagagctcaagggcaaggtcgcatgc
gagattcactcggccgacgagctggtccttactgagctggtcctcgagaacgttctcgcc
gaatacgaacccgaagaaattgtcgcgctcctttccgcattcgtgttccaagagaagacc
gacacggaacccacgctgactgcgagcctcgagcgcggcgtggccaagattgtggagata
tccgagaaggtcaacaaggtgcaaaccgaataccaggtcatcctgtctgccgacgactcg
aatgatttcgtatccaagccgcgctttggcatggtggaggtggtctacgagtgggctcgt
ggcatgtcgtttaaccggattacagacttgacggatgtcatggagggcacgattgtgcga
gtcattacgcgtttggatgaaacgtgtcgcgaggtcaagaacgcggcgaggatcattggg
gaccccgcgctgttccagaagatggggacttgccaggagctcatcaaacgcgacatttgt
aactgcgcaagcctgtacctgtag
DBGET
integrated database retrieval system
