KEGG   Ascochyta rabiei: EKO05_0005496
Entry
EKO05_0005496     CDS       T09445                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
arab  Ascochyta rabiei
Pathway
arab03040  Spliceosome
arab04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:arab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EKO05_0005496
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    EKO05_0005496
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arab03019]
    EKO05_0005496
   03041 Spliceosome [BR:arab03041]
    EKO05_0005496
   03032 DNA replication proteins [BR:arab03032]
    EKO05_0005496
Messenger RNA biogenesis [BR:arab03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     EKO05_0005496
Spliceosome [BR:arab03041]
 Complex A
  U1 snRNP components
   Sm proteins
    EKO05_0005496
  U2 snRNP components
    EKO05_0005496
 Complex B
  U1 snRNP components
    EKO05_0005496
  U4/U6.U5 tri-snRNP components
    EKO05_0005496
 Complex C
  U2 snRNP components
    EKO05_0005496
DNA replication proteins [BR:arab03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     EKO05_0005496
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 62214781
NCBI-ProteinID: XP_038798510
LinkDB
Position
8:join(1640518..1640565,1640613..1640673,1640729..1640858,1640908..1641022)
AA seq 117 aa
MTSTIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHL
EQVYIRGSHVRYFIVPDMLRNAPMFRSRGTRGRGVGLARGRATVIRARASGGRGGRP
NT seq 354 nt   +upstreamnt  +downstreamnt
atgacgagcacaatcggtatcccaatcaagcttctcaatgaggccgctggtcacattgtc
acgctggagattacctctggtgaagtctaccgtggcaagcttatcgaagctgaggacaac
atgaatgtacagctcaaggacattaccgtgactgcgcgcgacggtcgcgtgtcgcatctc
gagcaggtatacatcaggggtagccacgtccgatacttcatcgtcccagatatgttgagg
aacgcgcccatgttccgatcaagaggcacacggggccgtggtgttggtcttgcacgtggt
cgcgccacagtcatcagggcgagggccagtggtggacgaggtggacgtccttga

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