Ascochyta rabiei: EKO05_0005512
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Entry
EKO05_0005512 CDS
T09445
Name
(RefSeq) exosome 3'->5 exonuclease subunit ski4 (Csl4)
KO
K07573
exosome complex component CSL4
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0005512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0005512
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
EKO05_0005512
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
EKO05_0005512
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
84442715
NCBI-ProteinID:
XP_059492598
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Position
8:complement(1677425..1678045)
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AA seq
206 aa
AA seq
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MAVPPVALPGQLLGSADKYLPGPGTHMHDSQIYASIAGPVITSATPKTTQTKPSPLLSIQ
RPSTSTDPGILGTGSGGGGTILPEVNSIVLALITRLGPRFATCEILVIDNVVCRESFQGQ
IRREDIRATEKDKIKMEESFRVGDLIRGTVISLGDQSNYYVSTSENEFGVVMARSEEGRL
MYPVSWKEFRDPVTGRGESRKAAKPF
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcccccccgtagccctcccaggccagctgctcggcagcgcagacaaatacctc
ccaggcccaggcacgcacatgcacgactcacagatctacgcctcgatagccgggcccgtc
atcacatccgcaacccccaaaaccacacaaaccaagccctcgccgctcctctcgatacaa
cgcccctccacctccaccgacccaggcatcctgggcaccggctcaggcggcggcggcacc
atcctgcccgaagtcaactccatcgtgctcgccctcatcacgcgcctggggccccgcttc
gccacgtgcgaaatcctcgtcatcgacaacgtcgtctgccgcgagtcgttccagggccag
atccggcgcgaggacatacgcgccacggagaaggacaagatcaagatggaggagagcttc
cgcgtcggtgatttgatcaggggcactgtcattagtctgggcgatcagagcaactactac
gtcagcacgagcgagaacgaatttggtgttgtcatggcaaggagcgaggaggggcgcctt
atgtatccggttagctggaaggagtttcgggatcctgtcaccgggaggggggagagtagg
aaggctgctaagccgttttga
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