Ascochyta rabiei: EKO05_0006363
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Entry
EKO05_0006363 CDS
T09445
Name
(RefSeq) DEAD-box type RNA helicase
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
arab
Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arab03021
]
EKO05_0006363
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EKO05_0006363
5.6.2.5 RNA 5'-3' helicase
EKO05_0006363
Transcription machinery [BR:
arab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EKO05_0006363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEN1_N
AAA_11
AAA_12
SEN1_barrel
AAA_30
AAA_19
Viral_helicase1
UvrD-helicase
DEAD
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
62215078
NCBI-ProteinID:
XP_038797866
LinkDB
All DBs
Position
10:join(838727..838752,838888..842751,842803..844813)
Genome browser
AA seq
1966 aa
AA seq
DB search
MAEILEKINELRALPEDQHLFCPRVGEDGTIYYDEDVANYPPETDPAALKDRELRIQEAE
ERKWAALKATEILAFDGEEAAPHKEWLLSRLNQLMQSCDVCVRVFHQSRAEWKTRLVDTY
DEGNIGDFLNVVDDQCLGRIQAGLDKATAILSSAEPKARGVRILPGQCTYAFFEALSCDA
LVRNEDRLTQHFDAPFDLVQTKKRLKVQTYLPAMTRFLFSKKERRQRWAALSWSTSKRNL
IKSEFEWAVRDYMISAMMKIQMNNLDIELVPIFWSGARLIISKMDRELITEYIRGLDGNF
YRLMLDHLSLKSEAFLDILATMEELLKKAPVDFWEGMNAVTPSIATVVEQILNSPVLQQV
LIAANEGDEQGMSNLKASFSWIPLFVASIKPANLGPATRPFAQALFGRFQDGRYPSVSKA
MCYREGLKVLEFTFKKMCEGKTIDKFVGQPTVNGMMDMFSTHVQLLVSRLKQFGDSDTDL
EDQDLTLTVIQNAFLLEAQSLLIERQLISAKKPSPTETPSSAPIWKTILKAIDHQSLELA
SHLLVAGRSLIGLEPLSMKSGIEKIPAEVRHFNDRFKLLSQSVTDVVDRLSEFNPSQLHA
LFEKPVAASAIVSLLFSSTQDTRSSAIELMKVISLEEERRNALQYILKNYFKNVVMGISD
SVRQVMRKKAFAPTPSMIRTCRDVIDVLCNSQDGILRTKDLNTAEAAATMTLWKNLWDSL
TMIFATTEAWSNLGFYDKQMMMDFCRDTMQFADEVFDQCSIFATALKKQARSGDDESKAK
TELLQELLELPANAMEGLAKWLRLRDEFLSSKSVTLISKLLVRLHNVSIEINTDTLSYME
RILTGDIRAKLSTTQQAELQQALETHLGHSIVKEEESVQPKQASISKWMSTGAAASPSDA
KARLLSSLTSGSVAFKEKREAMRASEAKLAKQKALDAQKNASQDEFRRKRQLELQRREKE
KAAAIAKAKQARGLTQTNEAGSGLEGLGVLGKDSAAKGEGLMHSSDESEDSDGDIDEDLF
GIKKPKATTGPKTNIVNEVKIQMPFKKKRVQRSIKDMRARLAPDLSSLHRAILSWDYYYE
GDYPPNSNPGIYSKVLNTFRTPNDYQATFEPLLTLEAWQGFVKAREENQNKAYEVRITSR
ASVDMFQEVGSTMTHEENRDIFISEGDIILLSRTKTPSAEVPTCLARVFRVKRKQQHIEV
SYRVVPGNPLSSALNPSSAVFGVKLQSITPLEREYGALKGLQYYDLCDEIIRAKPSPLLT
YSDKQTDSLMENYNLNRAQAKAVKSAIDNDAFTLIQGPPGSGKTKTITAIVGAVLSDALR
RGGTAVPIPGGQQRNDTAAKKLLVCAPSNAAVDELVMRFKTGVKTLGGEERKLNIVRLGR
SDAIKANVQDVCLEELVSQRLGTSNPKNNDREATQKLFTDHKAISEKLRNAIAQIQTGEL
KGDDATKLQDDINALRKQKQNLGTKIDNAKDDEKLAGRNADLNRRRAQEAILNDAHVICA
TLSGSGHEMFQGLSIEFETVIVDEAAQCVEMSALIPLKYGCAKCILVGDPKQLPPTVFSK
EAARFAYEQSLFVRMQKNHPDDVHLLDTQYRMHPEISLFPSQTFYDGKLLDGGDMAGLRK
QPWHQSMLLGPYRFFDVQGQQSAAPKGHSLINRAEIDVALQLYKRLTSDYSSYDFKGKVG
IITPYKSQLKELKSQFTYVYGANIIDEIDFNTTDAFQGRESEVIIFSCVRASPAGGIGFL
QDIRRMNVGLTRAKSSLWVLGNSQSLVRGEFWKKLVVNAKERKRYTDGNVMRMLSEHSNK
YPAPKEGYVKSHRPTPEVKSEPMSGNGSGQSHGNGAFKQANEQEVKQEDQQEVKKELGLV
HHAKRKLSDSPVVKAERNGDDFDMIDAPSDTASNANTNAYNGGSGRSTPAAFSDANARSS
PAVDSDRANTPNQDMLGGVRAKPKIKKRPKPSGPFIDNRPKKPRTG
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atggcagagattctcgagaagatcaacgagcttcgagcattgccagaagaccaacatctc
ttctgccctcgcgttggtgaagatggaaccatatactacgacgaagatgtggccaactac
ccacccgagaccgacccggccgcactcaaagaccgcgaattacggatacaagaagccgag
gaacggaagtgggcagcactgaaggcaactgagattctagcttttgacggagaggaggca
gcaccgcacaaagaatggctattgagtcggctgaaccagctgatgcagagctgtgatgtc
tgcgtccgggtgttccaccaatctcgagcggagtggaagacacggctggtcgacacgtat
gatgaggggaatatcggagacttcttgaatgtggtggacgaccaatgccttgggcgtata
caagccggtctggacaaggcaaccgcgatactaagcagcgcagagcccaaggctcgtggt
gtgcggatactaccaggacagtgcacatatgcttttttcgaagcattgagctgcgacgca
ttggtacggaacgaggatcgcctcactcagcactttgacgccccgttcgatctcgtacag
accaagaagcgattaaaggtccagacctaccttcctgccatgactcggttcctgttcagt
aagaaggagcgccgccaaaggtgggctgcactttcttggtcaacctccaagcgcaatctt
atcaagtcagagttcgagtgggccgtgcgagactacatgatcagcgccatgatgaagatt
cagatgaacaacctcgacatcgagcttgttccaatattctggagtggagctcggctcatc
ataagcaagatggatagggaactgatcacggaatatattcgtggcctagacgggaacttc
taccggttgatgctcgatcacctctcattgaagtcggaggctttccttgacatactcgct
acgatggaggaattgttgaaaaaggcaccggtcgacttctgggaaggcatgaatgctgtg
actccctccatcgcaacggtagtggaacaaattcttaacagccctgtcctacaacaagtg
ctcattgcagcaaacgaaggggacgagcagggcatgtccaacctcaaagcgtcattcagc
tggataccgctctttgtcgcgtctatcaagccagcaaatcttggtccagcgactaggccg
tttgcccaggcgcttttcggtcggtttcaagacggacgatatccatcagtctctaaagct
atgtgttatcgcgagggtttgaaagtgctggaatttactttcaagaagatgtgcgaaggc
aagacaatagacaagtttgtggggcagcccacggtcaacggcatgatggacatgttttca
acacatgttcagctgttggtgtcgagactgaagcaatttggcgacagtgacaccgatttg
gaggatcaagacctgaccttgactgtgatccagaatgcttttttactcgaggctcagtct
ttgctcattgagagacagctaatctctgcaaagaagccttctccaacagagacgccatcg
tctgcaccgatatggaaaactatactgaaggcgatcgaccaccagagcttggagcttgct
tcccatttactggtcgcggggagaagcctgattggacttgagcctctatcgatgaagtct
ggcatcgagaagatccctgctgaagtgcgccacttcaacgaccgctttaagcttttatct
cagtccgtcacagatgtggttgatcggctctctgagttcaacccttcgcagctgcacgcc
cttttcgaaaagccggtcgcagcaagtgcgatcgtctcattgctgttttcatcgacacag
gacaccagaagctcagctattgagctgatgaaggttatcagcttggaagaggagcgacga
aacgctctgcagtacattctgaagaactactttaagaacgtagtcatgggtatttcggac
tcggttcgtcaggtcatgcgcaaaaaggctttcgctcctacaccaagtatgatcaggacg
tgtagggacgtcatcgatgttctgtgcaactcacaggatggtatattacgaaccaaagat
ctgaacactgcagaagcagcggcgacgatgactctgtggaagaacctatgggattcgttg
accatgatcttcgcgactacggaggcttggagcaatctgggtttctacgacaagcagatg
atgatggacttctgtcgagatactatgcaatttgctgacgaagtcttcgaccagtgcagt
atcttcgcgactgcgttgaagaagcaagctcgttcaggtgatgacgagagcaaggccaag
acggagcttttgcaggagctgctcgaacttccagcgaatgccatggagggcttagcaaag
tggttgcgtcttcgagatgagttcctgtcaagcaagtccgtcactctcatcagtaaactg
cttgttcgcctgcacaacgtatccattgagatcaacactgacacactctcttacatggag
aggattttgaccggcgacatccgcgccaagctcagcactacacaacaggctgagctgcaa
caagctcttgaaacccatcttggtcattccatcgtcaaagaagaggaatccgtacagcca
aagcaagcttccattagcaaatggatgtctaccggcgcagcagcatcgccaagcgacgca
aaggcgaggctgttgtcaagccttacttcaggttcggtcgccttcaaagagaaacgcgaa
gcgatgcgagcctcagaagcgaaacttgccaagcaaaaggctctcgatgcccagaagaat
gcttctcaagatgagtttaggaggaaacgtcagctcgagctacagaggcgcgagaaagag
aaggccgccgctatcgccaaagccaaacaggctcgagggcttacgcagactaacgaggca
ggctcggggctcgaaggccttggtgtgctgggtaaagactcagcagctaagggagaaggt
ctcatgcactcatctgatgagtccgaagacagcgatggcgatattgacgaggatcttttc
gggatcaagaagccgaaggcaaccactgggccgaaaaccaacattgtcaacgaagtcaag
attcaaatgccgttcaagaagaagagggtacagcgctcaatcaaggatatgcgagcccgt
cttgctcctgacttgtcttcactccatagggcgatcctcagctgggactactactacgaa
ggcgactacccaccaaactcgaaccctggaatctactccaaagtactcaacacattccga
acaccaaatgattaccaggcgacctttgaacctcttttgacacttgaagcgtggcaagga
tttgtcaaagctcgtgaagaaaaccagaacaaagcttacgaagtccgtatcacgtcacgg
gcaagtgtcgatatgttccaggaagtcggcagtacgatgacacacgaagagaaccgcgac
atttttatctctgaaggcgacatcattctcctttcgcggacgaaaacaccttctgctgag
gtgccaacatgtcttgctagggtgttccgtgtcaaaaggaaacagcagcacattgaagta
tcctaccgcgtggtacctggtaaccccctctcgtccgctctaaacccaagtagcgctgta
tttggagtaaagctgcagtccatcactccgcttgagcgcgagtatggcgcgctgaagggt
cttcagtactacgatctgtgtgatgagatcatacgggcgaagccatcacctcttttgacg
tacagcgacaaacagaccgattcgttgatggaaaactacaatctgaacagggcacaagcc
aaggcagtcaaatcagctatcgacaatgatgctttcacgttgatccaaggtcctcctggt
tccggaaaaactaaaactattactgccattgtcggggcggttttatccgacgctttacgt
agaggtggtacagctgtacctattcccggcgggcagcagcgaaacgatactgcagcaaag
aagttgttagtctgcgcacccagcaacgctgctgttgatgaactggtcatgcgttttaaa
actggcgtcaagactttgggcggtgaagagcgcaaactcaatattgtacgtcttggtcgc
agtgatgctatcaaagccaatgtccaggatgtctgtctggaagagcttgtcagccagagg
ttgggcacttccaaccccaaaaacaacgaccgtgaggcgacgcagaagctattcacagac
cacaaagcgatatcggagaagctcaggaatgccattgcgcaaattcaaaccggtgagctg
aagggagatgatgccacaaaactccaggacgatatcaacgctctccgaaagcaaaagcag
aatcttgggaccaagatcgacaacgcgaaggatgacgaaaagctagctggtcgtaacgcg
gatctcaatcgtcgacgagctcaagaagcgattttgaacgatgcacatgtcatctgcgca
acgctcagtggctccggtcacgaaatgttccaaggtcttagcattgagtttgaaacagtc
atagtggacgaggccgcgcagtgtgttgagatgagtgctctcatccctctcaagtacgga
tgcgctaagtgtatccttgttggtgatcccaaacagctgccaccgacggtcttttcgaaa
gaagctgcccgctttgcgtatgagcagagtttgttcgttcgcatgcagaagaaccatcca
gacgatgtccatcttctggatacgcagtatcgtatgcatcctgaaatcagtctgttcccg
agccaaacgttctacgacggcaaactcctggatggtggtgacatggctggtctgcgtaag
caaccttggcaccagagtatgctccttggaccatatcgatttttcgacgttcagggtcag
caatcagctgcacctaagggtcattcgcttatcaacagagcggaaattgatgttgctcta
cagttgtacaagcgactgaccagcgactactccagctatgacttcaaaggcaaagtcggc
atcatcaccccctacaagagtcaactcaaggagctgaagagccaattcacatacgtctat
ggcgctaatatcatcgacgaaattgacttcaacactaccgatgcattccagggtcgagaa
agcgaagtcatcattttctcttgcgtgcgtgcgtctccggcaggcgggatcggtttctta
caggatatccgtcgtatgaacgttggcctcacacgtgccaagtcctcgctgtgggtcttg
ggtaactcacaatcgcttgtccgtggagagttctggaagaagctcgtcgtgaacgcgaaa
gaaagaaagagatacacagatggtaacgtgatgaggatgctcagtgaacactccaacaag
tacccagcgcccaaagaagggtatgtcaaatcgcatcgtccaacgccggaggtcaaatct
gagccaatgagtggaaacggaagtggccagtctcatggaaacggtgctttcaaacaggca
aacgagcaagaggtcaaacaagaggaccagcaagaggttaagaaagagctaggccttgtg
caccatgcaaagcgcaagcttagcgatagcccggtcgtcaaagccgagagaaatggcgac
gacttcgacatgatcgatgccccgtccgacacggcgtctaacgccaacaccaatgcttac
aacggaggcagtggtcgctcaacacccgccgcattctctgatgcgaatgcaaggagttcg
ccagcggtcgacagtgaccgagccaatacgccaaatcaggatatgctgggcggggtgcgg
gcgaagcctaagatcaaaaagaggccgaagcccagtgggcctttcatcgacaacagacct
aagaaaccaaggacagggtaa
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integrated database retrieval system
