Ascochyta rabiei: EKO05_0006445
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Entry
EKO05_0006445 CDS
T09445
Name
(RefSeq) RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
arab
Ascochyta rabiei
Pathway
arab03013
Nucleocytoplasmic transport
arab03015
mRNA surveillance pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0006445
09122 Translation
03013 Nucleocytoplasmic transport
EKO05_0006445
03015 mRNA surveillance pathway
EKO05_0006445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0006445
03041 Spliceosome [BR:
arab03041
]
EKO05_0006445
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKO05_0006445
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EKO05_0006445
Spliceosome [BR:
arab03041
]
Complex C
Other components
EJC/TREX
EKO05_0006445
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EKO05_0006445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
62215150
NCBI-ProteinID:
XP_038797938
LinkDB
All DBs
Position
10:complement(join(1035102..1035408,1035460..1035820,1035870..1036286,1036717..1036948))
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AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEAPANGAAAAAKGGLAAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GAATILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQNDIELLSNKDTHPHII
VGTPGRINALVRDRHLRLSNLKHFVLDECDKMLDQPDMRNDVQSIFRATPAHKQVMMFSA
TLAKEIRETCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEREKNRKLNDLLDELEFNQ
VIIFVRSTLRCTELDKLLRECNFPSTAVHSGIDQKERIKRYKEFKDFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADSYLHRVGRAGRFGTKGLSISFISSPDDEAVLKSIEERFEV
SLPEFPEKGVDASTYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggacctcatcgattactccgacgaggagatccagccaacggaggcg
cctgccaacggtgccgcagccgcagctaagggtggccttgctgccggtgacgccgctggc
gacaagaagggcagctatgtcggcattcactcgaccggtttccgcgacttcctcctgaag
gacgagctcgtgcgagcaatcacggactgtggcttcgaacatccttccgaggtccagcaa
gttaccattcctcaggccatcctcggtaacgacgttctctgccaggccaagtctggtctc
ggaaagacagccgtcttcgtccttgctaccctgcaacagatggacgagaagcctgagcct
ggcgccgccacgatcctcgttatgtgccacactcgtgagttggcctaccagatcaggaac
gaatacaaccgttttgccaagttcttgcccgacgtcaaggtcggtgtcttttacggtgga
acacccgttcagaacgacattgagctcctcagcaacaaagacacccacccccacatcatc
gttggtacacccggtcgtatcaacgctctcgtccgcgacaggcatcttcgtctctccaac
ctcaagcactttgtcctcgacgagtgtgacaagatgctagaccagcctgacatgcgtaat
gacgtgcagtccatcttccgcgccactcctgctcacaagcaggtgatgatgttctctgcc
accttggcgaaagagatccgcgagacctgcaagaagttcatgcagaaccctcttgaaatc
tatgttgacgacgagaagaagttgacgcttcacggtctgcagcagtactacatgaagctt
gacgagcgtgagaagaacaggaagctcaatgaccttctcgacgagctggagttcaaccag
gtcattatcttcgttcgttcgactctgcgatgcacggagcttgacaagctgctgcgcgag
tgcaacttccccagtactgcagtacattctggcattgaccaaaaggagcgtatcaaacgc
tacaaggagttcaaggacttccaaacccgcatctgcgtgtctactgatatcttcggtcgt
ggtatcgatgttgaacgtattaacgtcgccatcaactacgacatgcctgacaaggccgac
tcctacctccaccgtgtcggtcgtgctggtcgtttcggaaccaaaggtctaagtatctcc
ttcatcagcagccctgacgatgaagctgttctgaagtcgatcgaggagcgcttcgaggtc
tcgcttcccgagtttcccgagaaaggtgtcgatgccagcacctacatggacaactaa
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