Ascochyta rabiei: EKO05_0006883
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Entry
EKO05_0006883 CDS
T09445
Name
(RefSeq) pre-mRNA-splicing factor rse1
KO
K12830
splicing factor 3B subunit 3
Organism
arab
Ascochyta rabiei
Pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0006883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arab03021
]
EKO05_0006883
03041 Spliceosome [BR:
arab03041
]
EKO05_0006883
03036 Chromosome and associated proteins [BR:
arab03036
]
EKO05_0006883
Transcription machinery [BR:
arab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
EKO05_0006883
Spliceosome [BR:
arab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
EKO05_0006883
Complex B
EKO05_0006883
Complex C
U2 SnRNP specific factors
EKO05_0006883
Chromosome and associated proteins [BR:
arab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
EKO05_0006883
TFTC complex
EKO05_0006883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
62215585
NCBI-ProteinID:
XP_038797412
LinkDB
All DBs
Position
11:complement(join(946372..947758,947924..950027,950146..950389))
Genome browser
AA seq
1244 aa
AA seq
DB search
MTTFSSMSLYALTVKQPSATQDALSGDFVGNGKQQILTANGSRLAILEVSRRQKGFQEMF
SQDVFGIVRRIAKFRVAGGTKDHIVVTTDSGRLVTYEYVPDEHTFKTVHFETYGKSGIRR
VVPGEYLAADPKGRAIMVASTEKNKLVYILTRSGQTDIAISSPLEAHKPQTLVFCLIGLD
VGYDNPMFATLEIDYSASEPDPTGEAYDEIKKELVYYELDLGLNHIVRKWAEPVDRTANT
LFRVPGGPNAPSGVLVCGEDSITYRRIFNNKSSVHRLAIPRREGATEDPNRKRTIVAGTL
YSLKGGDFFYLLQTDDGDLFKLTVEATDTTVDKIKIKYFDTIPIVTSICILRAGFVYAAC
ESGDRILYELESLGDETDDPLFDSSQFPLDLNAAFAPPFFKPRALANLTPVETIPSLNPI
MGMEVANPALEDAPQIYTINGAGGRSTFRTTRNALEVLDLIESPLPQNASDVWTTKLTSD
DENDTLIVLCLHSRTLVLKIGDDVEEAANTGFLPDTNTLGVQQFGEDCIIQIHPKGIRHI
QGISFPNDDANATHASLTDWQPPAHRTIVACATNNRQVAIALSSGQILYFECESDGSLAM
AEEEIALDSTINCLTMPDVPEGSVRAFFMAVGCSDQTVRIFNLSPDMEGNILRSISVQAL
TSPPSDLTINMMADKSPRGYSQYLHIGLRSGVYIRSVLDEMTGDIGDTRRRFLGPEPIKF
AKVTVADEPAIIAMTSRPWLGYTHPRTGVLQLTPLNYIPFKSAWNFEGTQFKGIICVSAA
ELRIFTFNDLTDNTTYETIPLKYTPRKMVGHHDQGVFYVIQSENNTLNDATRQNLIQEAK
VKNEDGTRHENGTDGNMEVDGDVASDELPAVEFGYPRVRGRWASCIQIVDPVTEKAVIHT
VDLPSNQSLVSAALVYFDSRGEDAFLAVGTAKDLTFTPYRFSGASIQIYKISPTGRELEL
FHETDVNEPPLALLAFKGKLIAGVGRNICLYDCGMRSLLRKAQASNCVSTRVTDIKTQGS
RLVVSDQVESVTYVVHKDQVHPNRLIPFVDDTVSRHTSASEMLDYDTTVGGDKFGNIWLV
RCPQKVSEGSDESPDGSDLLVDKSYLGGTANRLDLVTHYFANDIPISIQKTILLSGGERI
IFWAGLQGTLGALIPFTSRRQHKMFQQLELQLRSDDQPLSGRDHLAFRSYFAPVKSTIDG
DLIERFLVLSRDKRESIAAQLTGAEWTPGMIDEAIWNMRGLYAF
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccttctcctccatgtccctgtacgcgttgacggtcaagcagccgtcggccacg
caggacgccctttccggcgactttgtcggaaacggcaagcagcagatcctcaccgccaat
ggctcgcgcctggccatcctcgaggtctcgcggcggcagaagggcttccaggagatgttc
tcccaggacgtctttggcatcgtccgccgcatcgccaagttccgggttgcgggcggcaca
aaagaccacattgtcgtaaccaccgactccggccgcctggtcacgtacgagtacgtgccg
gacgagcacacgttcaagacggtgcactttgagacgtacggcaagtctggaatacgacgt
gtcgtgcccggcgagtacctggccgccgacccgaaagggcgcgccatcatggtggcttcg
accgagaagaacaagctggtctacattctcacccgcagcggtcagacggacattgccatc
tcctcgcctctcgaagcgcacaagccgcaaacactggtcttctgtctcatcggcctggat
gtcggctatgacaaccccatgttcgctaccctggagattgactattcggcgtccgagccg
gatcccacgggcgaggcgtacgatgagattaaaaaggagctggtctactacgagctcgac
cttggtctgaaccacattgtgcgcaagtgggcagagcctgtggaccgcactgcaaacacc
ctgttccgcgtccctggagggcccaacgcaccgagtggagtcctcgtctgcggagaagac
agcatcacctaccgacgcatcttcaacaacaagtcgagcgtccaccgcctggctattccc
cgcagggagggagccacagaagacccgaaccggaagcgaaccattgtcgcaggtacactg
tactcgctcaagggcggcgacttcttctacctcctccagaccgacgacggcgatctcttc
aagcttaccgtagaagctaccgacaccacagtggacaagatcaagatcaaatacttcgat
acaatccccatcgtaacaagtatctgcatcttgagggcgggcttcgtctatgccgcctgc
gagtccggcgacaggattctttacgagctcgagtctctcggggacgagacggacgatcct
ctctttgacagcagtcagttcccgttggacctgaatgcagccttcgcgcctcccttcttc
aagccacgagctctggcgaacttgacccccgtcgagaccattcccagcttgaacccaatc
atgggtatggaggtcgcaaacccggcgcttgaagacgcacctcagatctacaccatcaac
ggtgctggtgggcgaagcacatttcgcacaacgaggaacgctttggaggtactcgacctc
atcgagtctcccctaccgcagaacgcgtccgatgtttggacgacgaagctcacatcagac
gacgagaatgacactctcatcgtgctgtgtctgcacagcagaacgctggttctgaagatc
ggtgacgatgtcgaggaggcagcgaatacaggcttcttgcccgacacaaacacgcttggt
gtgcagcaattcggagaggactgcatcatccagatccatcccaagggcattcgacatatc
cagggcatctcgttccccaatgacgatgccaacgccacgcatgccagcttgactgactgg
caaccaccggcacaccggaccatcgtcgcctgcgctaccaacaaccgccaagttgccatc
gcgctcagctcaggtcagatcctctacttcgagtgtgaatccgacggttcgcttgcgatg
gctgaggaagagattgccttggacagcaccatcaactgtctgacgatgcctgacgtgcct
gaaggcagcgtccgagccttcttcatggctgtcggctgcagtgaccagaccgtgaggatc
ttcaacctgagtccagacatggaaggaaacattctgcgaagcatctctgtccaggctctc
acatcaccgccaagcgacttgaccatcaacatgatggcggacaagtccccgcgaggatac
agccagtacctccacatcggtctgcgaagtggtgtgtacatccgatctgtgctagatgag
atgactggcgacattggagacacgcgaagacgtttcctcggcccggaacctatcaaattc
gccaaggtgaccgtcgctgacgagcctgccatcatcgcaatgacctccaggccatggctc
ggctacactcacccacggactggcgttctgcagttgacgccgttgaactacattcctttc
aagtctgcttggaactttgagggtacacagttcaagggcatcatctgcgtgagcgccgct
gaactacgaatcttcacgtttaacgatttgaccgacaacacgacctacgagacgataccg
ttgaagtacacgccaaggaagatggtcggccaccacgaccagggtgtcttctacgtgatt
caaagcgagaacaacactctcaacgacgccacacggcaaaatctcatccaggaagcaaag
gtcaagaacgaagacgggaccaggcatgagaacggtaccgatggcaacatggaagtcgac
ggcgatgtggccagtgatgagcttcccgcagtcgaattcggctacccacgtgtgcgaggg
cgctgggcttcctgcattcaaatcgtcgatcccgtgactgaaaaggccgtcatccacaca
gtagacctcccctccaaccagtcgttggtcagcgctgctttggtctacttcgacagccgt
ggtgaagatgccttccttgctgtcggtaccgccaaggacctcacctttacaccttacagg
ttttctggtgcgtcgatacagatctacaagatttctccgacaggccgcgagctggagctg
ttccacgagacagacgtgaacgagcctccgctggccttgctcgccttcaagggcaagctc
attgccggtgttgggcgaaacatctgcctgtacgactgcggtatgcgctcgcttcttcga
aaggcgcaggcctcgaactgcgtgagcactcgcgttacggacatcaagacccagggtagt
cgccttgttgtgtcggatcaggtcgagtctgtcacatacgttgtccacaaggaccaagtc
caccccaaccgactgatcccatttgttgacgataccgtctcgaggcatactagcgcttcg
gagatgctcgactacgacaccactgttggcggagacaagtttggcaacatttggcttgtg
cgctgcccacagaaggtctctgagggttctgacgagtcgcctgacggttccgacctgctc
gtcgacaagagctaccttggcggcacagcgaaccggctggacctcgttacccactacttc
gccaacgacatccccatttcgatacagaagacgatcctcctgtctggtggcgagcgcatc
atcttctgggctggtctgcaaggcacgctcggcgcgctcatccccttcacgtcgcgaagg
cagcacaagatgttccagcagctggagctgcagctccggtcggacgatcagccgctgtct
gggcgcgaccacctggcgttccgcagctactttgcacctgtcaagagcacgattgacggc
gacctgattgagcggttcctggtgctgtcacgagacaagcgcgagagcatcgcggcgcag
ttgacgggcgcggaatggacgccgggcatgattgacgaggcgatttggaacatgcggggt
ctgtacgccttttag
DBGET
integrated database retrieval system
