Ascochyta rabiei: EKO05_0007177
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Entry
EKO05_0007177 CDS
T09445
Name
(RefSeq) RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0007177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0007177
03041 Spliceosome [BR:
arab03041
]
EKO05_0007177
03009 Ribosome biogenesis [BR:
arab03009
]
EKO05_0007177
03016 Transfer RNA biogenesis [BR:
arab03016
]
EKO05_0007177
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKO05_0007177
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EKO05_0007177
Spliceosome [BR:
arab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EKO05_0007177
Complex C
U4/U6.U5 tri-SnRNP related factors
EKO05_0007177
Ribosome biogenesis [BR:
arab03009
]
Eukaryotic type
Pre-60S particles
Helicases
EKO05_0007177
Transfer RNA biogenesis [BR:
arab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EKO05_0007177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
eIF3_p135
Motif
Other DBs
NCBI-GeneID:
62220745
NCBI-ProteinID:
XP_038792363
LinkDB
All DBs
Position
12:complement(join(269150..269330,269382..269944,269993..272452))
Genome browser
AA seq
1067 aa
AA seq
DB search
MDDLFDVFDGEPAGAAQHAPKKSKRTKKRQANGAVKSPVADSPMSDAPAAGSDGPSEDNE
TGSAAPQHLKRQKRDVEPEAIVTDDFETEQTREIAAAAGLQAQTVQDGQGVVLSHQVRHQ
VSLPPDYDYVPISGHKAPAEPARVWPFTLDPFQQVSIASIQRNESVLVSAHTSAGKTVVA
EYAIAQCLKNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEI
LRSMLYRGSEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQ
FAEWITKTHSQPCHVVYTDFRPTPLQHYFFPQGADGIHLVVDEKGVFREENFQKAMTSIA
DKAGSAANDFLAKRKGKGKDKKTNTGGNKEGSDIYKIVKMIMVKSYNPVIVFSFSKRDCE
NYALSMSQLSFNDDSEKAMVSKVFSSAIEMLSEEDRALPQIQHILPLLRRGIGVHHSGLL
PILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAQRWVTPSEFIQM
SGRAGRRGLDDRGIVIMMIDQQMDPAVAKEIVRGQQDNLNSAFYLGYNMILNLMRVEGIS
PEFMLERCFFQFQNTAGVSSLEKQLGELENEKASTVITDEATVKDYYNLRQQLDSHTKDM
RDVIMHPNYCLPFLQAGRLVKIKFKNHDFGWGAVVAFTPRRANKGESLQPQESYVVDVLL
SVASDSKFAPQANDGLPPGVRPPPAGEKGKMEVVPVLLSCIESIGHLRVFLPNELKSTEQ
KNGVRKALDEVRKRFPDGIAILDPIENMKITDESFKRLLRKIEVLESRLLSNPLHNSPRL
PELYRQYATKMALTDKIKQIKKEIADALSVIQLDELKSRKRVLRRLGFIDEADVVQLKAR
VACEISTGDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKSSEVPALKEELAKPYREI
QQQARVIAKISQESKLTVNEEEYLKTFKYELMDVVFAWSKGATFAQICKMTDVYEGSLIR
LFRRLEELLRQIAQAAKVMGSEELEQKFTAALELVRRDLVAAQSLYL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcttcgacgtcttcgatggcgagcccgccggcgccgcacagcacgcgccc
aagaaaagcaagcggaccaagaagcgccaggccaacggcgccgtcaagtcgcccgtcgcc
gactcgcccatgtcagacgcgccggcagcgggcagcgacgggccgtccgaggacaacgag
acgggcagcgctgcgccacagcacctcaagcggcagaagcgcgacgtcgagcccgaggcc
attgtcaccgacgacttcgagacggagcagacgcgcgagatcgccgccgccgccggcctg
caggcccagacggtgcaggacggccagggtgtcgtgctctcgcaccaggtccgccaccag
gtctcgctcccgcccgactacgactacgtccccatctccgggcacaaggcccccgccgag
cctgcacgcgtgtggcccttcaccctcgaccccttccagcaggtctcgattgcctcgatc
cagcgcaacgagagcgtcttggtctcggcgcacacctcggccggcaagacggtcgtggcc
gagtacgccatcgcgcagtgtctgaagaacaaccagcgagtcatctacacgagccccatc
aaggccctcagcaaccagaagtaccgcgagttcatggcagagttcggcgacgttggcctc
atgacgggcgatgtcaccatcaaccccaccgcgacctgcctggtcatgaccaccgagatt
ctgcgctccatgctgtaccgcggctccgagatcatgcgcgaagtcgcctgggtcgtcttc
gacgaggtccactatctgcgtgacaagtcgcgcggtgtcgtctgggaggagaccatcatc
ctcctgccagacaaggtccgctacgtcttcctgtccgccacgatccccaacgccatgcag
ttcgccgagtggatcacaaagacacacagccagccgtgccacgtcgtctacaccgacttc
cgcccgacgcccctgcagcactacttcttcccccagggtgcagacggtatccacctggtc
gtcgacgagaagggcgtgttccgagaggagaacttccagaaggccatgacgtcgatcgca
gacaaggccggatccgccgccaacgacttcctcgccaaacgcaagggcaagggcaaggac
aagaagaccaacactggcggcaacaaagaaggctccgacatctacaagatcgtcaagatg
atcatggtcaagagctacaacccagtcattgtcttcagtttcagcaagcgcgactgcgag
aactatgccctgtccatgagccagctttcgttcaacgatgactcggagaaagccatggtc
tccaaggtcttcagcagcgccattgagatgctgtcggaagaggaccgtgctttgccccag
atccagcacattcttccccttttgcgaagaggtattggcgttcatcactcgggcctactg
cccatcctcaaggagaccattgagattctgttccaggagggtctgatcaaggtcctgttc
gcgaccgaaaccttctccattggtctgaacatgccggccaagaccgtcgtcttcacgagt
gttcgcaaattcgatggtgtggctcagagatgggtgaccccgtccgagttcatccagatg
tctggtcgtgctggtcgtcgtggtctcgatgaccgtggtattgtcattatgatgatcgac
cagcagatggaccctgccgttgcaaaggagattgttcgtggacagcaagacaacctgaac
tctgcgttttatctgggatacaacatgattctgaacctgatgcgtgtcgaaggcatctca
ccggagtttatgctggagcgctgtttcttccagttccagaacacggctggtgtgtctagc
ttggagaagcagcttggagagctcgagaatgaaaaggccagcacagtcatcaccgacgag
gccacggtcaaggactactacaacctgcgacagcagctggacagccacaccaaagacatg
cgcgatgtcatcatgcatcccaattactgcctcccgttcttgcaggctggtcgcttagtc
aagatcaagttcaagaaccatgactttgggtggggtgctgttgtcgctttcacgcccagg
agggccaacaagggtgagagtctgcaaccacaagagtcgtatgttgtcgatgtgttgctg
tcggtcgcgagcgatagcaaattcgcaccacaggcaaacgacgggctgccaccaggcgtt
cgcccaccacccgcaggagagaagggtaagatggaggtcgtacccgtcttactgagctgc
atcgagtcgataggacatctgcgtgtcttcttgccaaacgagctgaagtcgactgaacag
aagaacggcgttcgcaaggcgctggatgaagtcaggaagcgtttcccggatggtatcgcc
attctcgaccctattgagaacatgaagattacagatgaaagcttcaagcgcttattgagg
aaaatcgaggtgcttgagtctcgcctcttgtcgaaccctcttcacaactcgcccagattg
ccggagctgtaccggcagtacgcgaccaagatggcgcttacggacaagatcaagcagatc
aagaaggagattgccgacgccctgtctgtcatccagctcgacgagctgaagagcaggaag
cgagtgctgcgacgtctaggcttcattgacgaagccgacgtggttcagctcaaggcacgc
gttgcttgcgagatcagtaccggtgacgaactcgtcctcagcgagttgctgttcaatcgc
ttcttcaacgagctcacaccagagcagtgtgctgcctgtttgagttgcttcatctttgaa
gagaagagcagcgaagttccagcgttgaaggaggagcttgccaagccgtaccgcgaaatc
cagcagcaagccagggtgattgcgaagatatcgcaggagagcaagctcacggtcaacgag
gaagagtacctcaagacgttcaagtacgagctgatggatgttgtctttgcgtggtccaag
ggcgcaacgtttgctcagatttgcaaaatgacggatgtgtacgaaggcagtctgattcgc
ctgttccgacggctcgaagagctgctgcggcagatcgctcaggccgccaaagtgatgggc
agtgaagagctcgagcagaagttcaccgccgcgctcgagctggtccgacgagacttggtg
gcagcccagtccttgtacctctga
DBGET
integrated database retrieval system
