Ascochyta rabiei: EKO05_0007783
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Entry
EKO05_0007783 CDS
T09445
Name
(RefSeq) ATP-dependent RNA helicase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
arab
Ascochyta rabiei
Pathway
arab03013
Nucleocytoplasmic transport
arab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EKO05_0007783
03015 mRNA surveillance pathway
EKO05_0007783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0007783
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EKO05_0007783
5.6.2.5 RNA 5'-3' helicase
EKO05_0007783
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
EKO05_0007783
mRNA cycle factors
Common to processing body (P body) and stress granule
EKO05_0007783
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
Viral_helicase1
NPHP3_N
PIF1
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND3
AAA_22
Ribosomal_S13_N
AAA_5
ATPase
AAA
Motif
Other DBs
NCBI-GeneID:
62216007
NCBI-ProteinID:
XP_038797079
LinkDB
All DBs
Position
13:complement(619652..622870)
Genome browser
AA seq
1072 aa
AA seq
DB search
MEGAFTHMGNHLVSDSAATINAGAGDDEITGLSARRRRNDDEDDDLFDDDAESIMDMPAG
GANGQQMAKEEEEVELPAHACAYCGIHNAGSVVKCLACNKWFCSARGNSSSSHIINHLVR
ARHKEVQLHPASSLGDTTLECYSCGVKNVFLLGFIPAKSDTVVVLLCRQPCASMPSQKDM
NWDTSRWQPLIEDRSFLPWLVPPPTDQEQLRARHLSPQTIAKLEELWKDNANATIADLEK
GAGQEEVIAKVLLRYDDAFQYQNVFGPLVKIEADYDRKLKESQSQDNLIVRWDMALNNKH
TASFILPKLELGDVKLAVGDEMRLRYTGELRPHWEGVGYVIKIPNNQSDEVTIELRTKGD
HKSVPTECTHNFSADYVWKATSFDRMQHAMKTFAIDEMSVSGYIFHRLLGHEVASAPMKI
QIPRKFSVPGLPELNGSQINAVKSVLQKPLSLIQGPPGTGKTVTSATIIYHLCKISGSQV
LVCAPSNVAVDQLCERIHLTGLKTVRVTAKSREDVESPVGFLSLHEQVRMNDTNVELNKL
NQLKSDVGELSSQDEKKFKQLTRAAEREILNAADVICCTCVGAGDPRLSKMKFRTVLIDE
STQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAATAGLNQSLFERLVILGCSPIR
LQVQYRMHPCLSEFPSNMFYEGSLQNGVTMQERVRRDVDFPWPVGDNPMMFWSNLGAEEI
SASGTSYLNRTEAQNVEKIVTRFFKAGVQPSDIGIITPYEGQRSYVVSSMQATGSFKKEN
YKEVEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPK
VLSKHPLWHYLLLHFKERNCLVEGPLSNLQVSLLQFSRPKQTYRGPQRYQMAYQHANAMT
SGRQGSYNGGKPTRQDFNDNGSIVGYIPDDVSSVHSSALGGVPSNYPPMFSNFQESWPLP
GRNGQGPRGQSRAPQSVAGESIAASELTDTRSDAPGGISLSGLNLNDYNKPTSLSQSDRL
NRFVESTRQGPNMGGGFAAGRGLRNGLGFDDDDARSVSTAFASQIGGPGNYD
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccttcacccacatgggcaaccacctggtgtccgactcggcagccaccatc
aacgctggcgccggcgacgacgaaatcacgggactaagtgctcgccgccgcaggaatgac
gacgaggacgacgacctgtttgacgacgatgccgagagcatcatggacatgcccgccgga
ggagccaacggacagcagatggccaaggaagaagaggaggtcgagcttcccgcacacgct
tgcgcatactgcggtatccacaacgcgggcagcgtcgtcaagtgcttggcttgcaacaaa
tggttctgcagcgcccgcggcaactcgtcgtcgtcgcacatcatcaaccaccttgttcgc
gcccgtcacaaggaagttcagctgcacccggcctcgtcgctcggcgacacgacgctcgag
tgctacagctgcggcgtgaagaacgtcttcttgcttggtttcattcctgccaagtcggat
accgtcgttgtgctgctgtgccgtcagccgtgcgcctcgatgccctcacagaaagacatg
aactgggacacctcacgttggcagccgctcatcgaagaccgctccttccttccttggctt
gtgcccccaccgaccgaccaagagcagcttcgcgctcgtcaccttagcccacagacgatt
gcgaagctcgaggagctatggaaagacaacgcgaacgctaccattgcggacttggagaag
ggcgccggacaagaggaggtcattgccaaggttctgcttcgctacgacgacgcgttccaa
taccagaacgtctttggtcctctggtcaagatcgaggcggactacgaccgcaagctgaag
gagtcgcaatcgcaggacaacctgatcgttcgctgggacatggcgctgaacaataaacac
accgccagcttcatcctccccaagctcgagttgggtgacgtcaagcttgccgttggagac
gagatgcgcctgcgatacacgggagagctgcgtcctcactgggaaggagtcggatacgtc
atcaagatcccaaacaaccagtccgacgaggtgacaattgagctgcgcacaaagggcgac
cacaagtcggtcccaaccgaatgtacccacaacttcagcgccgactacgtatggaaggcg
acctcgttcgaccgcatgcagcacgccatgaagacgtttgcaattgacgagatgagcgtg
tctggctacattttccaccgcctgttgggccatgaggtcgcatcggcacccatgaagatc
cagatccctcgcaagttcagtgtaccaggcttgccagagctgaacggcagtcagattaac
gcggtcaagagcgttctgcaaaagcctcttagtctgatccagggtcccccgggtaccgga
aagaccgtcacttcagcaacgatcatctaccacctctgcaagatcagcggcagccaagtg
ttggtttgtgcaccatccaacgtcgctgttgaccagctttgcgaacgtatccatctcact
ggcctgaaaactgttcgcgtcactgcaaagtccagggaagatgtcgagtctccggtcggc
ttcttgtctctccacgagcaggttcgcatgaacgacaccaacgtcgagctcaacaagctc
aaccagctcaagagtgacgttggcgagctgtccagccaggatgagaagaagttcaagcaa
ctcactcgtgcagccgaacgcgaaattctcaatgcggccgacgtcatctgctgcacttgc
gttggtgctggagacccgcgcctttctaagatgaagttccgcacggtccttattgacgag
tctacgcagtctgccgaacccgagtgcatgattcctctggtccttgggtgcaagcaggtc
gtgcttgttggtgatcaccagcaactcggacctgtcattatgaacaagaaggctgctacc
gccgggcttaatcagtcccttttcgaacgtctggtcatcctgggctgctctccaatccgc
ctacaagttcagtaccgcatgcacccttgcctgtccgagtttccttcaaacatgttttac
gaaggctcgctccaaaatggtgtaaccatgcaggagcgtgtgcgccgcgacgttgatttc
ccctggcctgtcggcgacaatcccatgatgttctggtccaaccttggtgcagaagagatc
tcggccagtggcacgtcttacctcaatcgtaccgaggcgcagaatgtcgagaagatcgtc
actcgtttctttaaggcaggcgtacaaccgagcgacattggtatcatcacgccgtacgag
ggtcagcgcagttacgttgtcagctccatgcaggcgaccggcagcttcaagaaggagaac
tacaaagaggttgaggttgcttccgtcgatgccttccaaggtcgtgagaaggatttcatc
atcctgtcttgcgttcgttccaacgaccaccaaggtatcggtttcttgagtgatcctcgt
cgtctcaacgtcgctctcacgcgtgccaaatacggtctcgtcattcttggaaacccgaag
gttcttagcaagcacccgttgtggcactacctcttgctccatttcaaggaacgcaactgc
ctcgttgaagggcccctgtccaacctgcaggtctcgcttctgcaattcagccgtcccaag
cagacataccgcggaccccaacgctaccagatggcgtaccagcatgcaaatgccatgact
tccggtcgccaaggtagctacaacggcggcaagccgactcgtcaagatttcaacgacaac
ggctctattgtcggttatattcccgatgatgtgtcttcggttcactcctctgctcttggt
ggcgttccttccaactatcctcccatgttctccaactttcaggagtcctggcctcttcct
ggtcgcaacggtcagggtcccaggggtcagagcagagcaccacagagcgttgccggcgaa
tctatcgctgcgagtgagctgaccgatacccgcagcgatgctcccggcggcatcagcctc
tctggtttgaacctgaacgactacaacaagcccacgtcactcagccagtctgatcgtctg
aaccgctttgttgagtcgacacgccagggtcccaacatgggcggtggatttgctgctggt
cgtggcttgcgtaacggtctcggatttgacgacgacgatgctcgcagtgtctctactgct
ttcgccagtcaaatcggtgggcctggcaactatgactga
DBGET
integrated database retrieval system
