Ascochyta rabiei: EKO05_0007909
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Entry
EKO05_0007909 CDS
T09445
Name
(RefSeq) E3 ubiquitin-protein ligase pub1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
arab
Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0007909
03041 Spliceosome [BR:
arab03041
]
EKO05_0007909
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
EKO05_0007909
Spliceosome [BR:
arab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
EKO05_0007909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_7
RRM_10
RRM_PARP14_3
RRM_8
Motif
Other DBs
NCBI-GeneID:
62215877
NCBI-ProteinID:
XP_038796949
LinkDB
All DBs
Position
13:join(1231738..1232121,1232232..1232321,1232376..1233023,1233078..1233213,1233271..1233491)
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AA seq
492 aa
AA seq
DB search
MADAAPPGSNLPPPPPSAGPPGYDGQQGNPQQQHMPPPALAPVIIPQNTNPIPTAISSPM
SGGVMSPGSATGPGYASRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIP
DKTASAPSGFNYGFVEYDDPGAAERGMQTLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHF
HIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERALSS
MDGEWLGSRAIRCNWANQKGQPSISQQQAMASMGMTPTTPFGHHHFPTHGVQSYDMVVAQ
TPQWQTTCYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQ
LNGYNVNGRPLKCSWGKDRPPTGQFEGYSPAGPSPAYAQTPSAYFPQYGGGPGGPMSPSG
PSPGGQPFAQQQAGFGGPGMNYQQMQPQQMQPQQMQPGSAGGYGRGAPAPQQQWGQPGQG
GFNQNGFGGYQG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctgctccccccggcagcaacctgccgcccccaccgccctccgccggtcct
cctggctacgacggccagcagggcaacccccagcagcagcacatgcctcctcctgcgctc
gcccctgtgatcatcccgcaaaacacgaaccccattccgacggccatcagctctcccatg
tccggcggcgtcatgtctcccggcagcgccacgggtcctggctacgcttcgcgccgtgcc
gcgccggagcccaacaagagggccctgtacgtcggcggtctggacccccgtgtcaccgaa
gacgttctgcgccagatcttcgagacaacgggccacgttcagagcgtcaagatcatccct
gacaagactgccagcgctccctcgggcttcaactacggctttgtcgagtacgatgatcct
ggtgcggccgagcgaggcatgcagaccctcaacggtcgccgcatccacaacaacgaaatt
cgtgtcaactgggcctaccagtccaacaacaccgccaaggaggacacctcaaaccacttc
cacatcttcgttggcgacctgtccaatgaggtcaacgatgaggtgcttctccaagccttc
tccacctttggccccgtctccgaggcccgcgtcatgtgggacatgaagacgggcaggtct
cgtggctacggtttcgtggcattccgtgatcgcgccgatgccgagcgagcactcagctcc
atggatggagagtggcttggttcgcgtgccattcgctgcaactgggccaaccaaaagggt
cagccctccatctcccagcagcaggccatggcctcgatgggcatgactccgacaacgcct
ttcggccaccaccacttccccacccacggcgtccagagctacgacatggtggttgcccag
accccccagtggcagactacctgctacgtcggcaacctcacgccatacacgtcgcagtct
gatctcgttcctcttttccagaactttggttatgtcaccgagacgcgcttccagtctgac
cgcggttttgctttcatcaaaatggacacccatgaaaacgctgccatggccatctgccaa
ctcaacggctacaacgtcaatggccgacctctgaagtgcagctggggcaaagatcgcccg
cccaccggccagtttgaaggctactcgcctgcaggtccgagcccagcgtacgctcagacg
cccagcgcgtactttcctcagtatggtggcggaccaggtggtcccatgtcaccttcagga
cccagccccggcggacaaccctttgctcagcaacaagccggctttgggggtcctggcatg
aactaccagcagatgcagccgcagcagatgcagccacagcagatgcagccaggtagtgct
ggtggctacggtcgtggcgcgcccgccccccagcagcaatggggccagcccggccagggc
ggcttcaaccaaaacggcttcggtggctaccagggatag
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