Ascochyta rabiei: EKO05_0008140
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Entry
EKO05_0008140 CDS
T09445
Name
(RefSeq) Mismatch repair protein msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
arab
Ascochyta rabiei
Pathway
arab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
EKO05_0008140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0008140
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
EKO05_0008140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
DUF4911
Motif
Other DBs
NCBI-GeneID:
84442935
NCBI-ProteinID:
XP_059493201
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Position
14:join(642129..645415,645467..645548)
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AA seq
1122 aa
AA seq
DB search
MAPKSSQPPLSASQRTKQQSISSFFAPKPSQAPKAAPSSAPKPASPATDGANRNDHGDET
SPLGHSILSRKRTVSNSGDDGESPKRVRIAESEDARPSLDQATEASLNTPKAMTRTDRTS
RFLFSSSPPPRDENAAAQEEDAAATQRERERLHEKFVKKLGRPDSFAELRRRNKVLTEEE
ANGEGEGEDEDEEQEAPKPAKGKKGAATKKPASKLTPMDKQYLEIKRKHLDTIIVMEVGY
KFKFFGEDARTASKELGIVCIPGKFRYDEHPSEAHLDRFASASFPVHRLQVHVKRLVKAN
HKVGVVRQIETAALKAAGDNRNTPFVRKLTNLYTKGTYVDDVEGLETAAESPAGGAQSTG
YLLCITETNANGWGTDEKVQVGLVAVQPATGDIIYDDFEDGFMRSEIETRLLHIAPAEFL
VVGDLSKATDKLIQHLSASKTNVFGDRSRVERVEKPKTMAAQAYGHISNFYADKMKSSQG
GGSSSQGAILDKVHQLSEHVTICLSAMITYLSEYGLEHVFDLTKYFQPFSARSYMLLNGN
TLSSLEIYQNQTDYTAKGSLFWTMDRTKTRFGQRLLRKWVGRPLIDKERLEERITAVEEL
KNGENTIPFDKLKFLLGRTRTDLEKVLIRIYYKKCTRPELLAALQTLQDISGQYLQVKSP
EQSGFSSTLLSEAVSNIPKIYDDLNKFLEKINASAAKADDKYGFFQEEHEAEDINDLKLS
IASVEDDLNTHRKEAAAKLGITKVDYVTVAGIEYLIEVKRKSPQEKKVPASWQQISATKA
TLRFHTPEVKRMCQERDQYKESLAAACDAAFMRLLDDISAKYQELRDCVHSIATLDALFS
LAILANQPGYVKPTFTDEIELNISGGRHPMVEQLLLDSYVPNDLQLSHSATRALLVTGPN
MGGKSSYVRSAALIAIMGQIGSYVPATEARLGMLDAVFTRMGAFDNMLKGESTFMVELNE
TSDILRSATSRSLIILDELGRGTSTFDGVAIAEAVLDYVIRDIQGLTLFITHYQHLSKLH
SRFTNGELKNVHMSFEERDGGREVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIDVASVK
SSELEDNMTACKMGNLSRLMKGIMNDNSEQSLDRLVESIEQL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaaaagcagtcagccacccttgagcgcctcccaaaggacgaaacaacaatcg
atatcgagtttcttcgcgccgaagccatctcaagcgccaaaggcagcacccagctcagct
ccgaaacccgcgtctccagccactgacggtgcgaatcgcaatgaccacggagacgagaca
tcgcctctagggcactccatactgagccgcaagcgcaccgtttccaattctggcgacgac
ggcgagtctcctaaacgcgtgcgaattgcagaaagcgaagatgcgcggccgtcgctcgat
caggcgactgaagcaagtctgaatacgcccaaagctatgacgaggacagatagaacgtca
aggtttttattctcttcatcacctccgccacgcgatgagaacgccgcagcgcaggaggaa
gacgctgcagcaacacaacgggagagggagagactgcatgagaagttcgtcaagaagctt
ggacgcccggacagctttgcggagttgcgcaggaggaacaaggttttgacggaagaagaa
gccaatggcgagggtgagggcgaggatgaagatgaagagcaagaggctccgaagccagcg
aaagggaaaaaaggtgcagccacgaagaagccagcttcgaaactaacgccaatggataaa
cagtacctggagatcaagcgtaaacacctcgacactatcatcgtgatggaggtcggatac
aagttcaagttcttcggcgaggatgcgaggacagcatcgaaggagctggggattgtctgc
ataccaggcaagtttaggtacgacgagcatccgtcagaagcgcacctggatcgatttgcg
tcagccagctttccggtgcaccgactgcaagtccacgtcaagcgccttgtcaaagcgaat
cacaaagtcggagtagtacggcagatcgagactgctgcgctcaaggcagctggcgacaat
agaaacacgccatttgtgcggaagctcacaaatctttacacaaagggcacgtatgtcgat
gacgtcgagggattggagactgccgccgaaagtcctgccggcggcgcacaaagcacaggt
tacctgctctgcatcaccgagacgaatgcaaatggctggggcacagacgagaaggtacaa
gtcggcctggtcgctgtccagcccgcaaccggagacatcatttacgacgactttgaggat
ggttttatgcgaagtgagatcgaaacacgactactccacattgcaccagctgaattcctt
gtcgtcggtgatttgtcgaaggctacagataaactcatacagcatctttcagcgagcaag
acgaatgtgtttggagatcgatcgcgagttgaaagggtagaaaagccaaagactatggct
gcacaagcttacggtcatatctccaacttctacgccgacaaaatgaagtctagtcaagga
ggtggctcatcgagtcagggtgcgattctcgacaaagtacatcaactgtcagaacacgtt
acaatctgcttgtcggcaatgatcacatatctaagcgagtatgggttagagcatgtcttc
gatctgacaaaatactttcagccattcagcgcaagatcgtacatgctcctgaacggcaac
acgctctccagtctcgagatctatcagaaccagactgactacaccgcaaaaggcagcttg
ttctggacgatggacaggacgaagactcgcttcggacagcgcttgctgagaaaatgggtt
ggccggccactgattgacaaggagcgcctggaggaacgcattacggcggtcgaagagctc
aaaaacggcgagaataccataccgtttgacaagctaaagtttctgcttggtagaaccagg
accgacctagaaaaggtgctgatcagaatctactacaagaaatgcacgcggccggagctt
ctggctgcgctgcaaacgcttcaggatatctctggtcagtacctgcaggtcaagtcacct
gagcagagtggtttttcatcgaccctattgagcgaggcggtgtcaaatatccctaagatc
tacgacgacctcaacaaatttctcgaaaagatcaacgccagcgccgctaaggctgacgat
aagtacggcttcttccaagaggagcatgaagcggaagacatcaacgacctcaagcttagc
attgcctccgtggaagatgacctcaacacccaccgcaaagaggccgctgcaaagttggga
atcacaaaagttgactacgttactgttgctggaattgagtatctgatcgaggtcaagcgc
aagtctccgcaagagaagaaagtccccgcttcgtggcaacagatctccgcaaccaaagct
acactccgattccatacccctgaagtcaagcgcatgtgccaagagcgcgatcaatacaaa
gagtctctagccgcagcctgcgacgctgcattcatgcgtctgctagacgatatctccgca
aagtatcaagagcttcgggactgcgtgcattccattgcgacgcttgacgcacttttttct
ttggccattctagctaatcaacctggctatgttaagcctaccttcactgacgagatcgag
ctcaacattagcggcggtcggcaccctatggttgagcaactattgctggacagctatgtg
ccgaacgacctccagctctcgcactccgccacgcgtgcgctactagtcactggaccgaac
atgggcggcaaatcttcgtatgtacgctccgctgctctcatcgccattatgggacagatc
gggtcgtatgtacctgcaacagaggcacggcttggcatgctagatgcggtcttcacacgc
atgggtgcatttgacaacatgctaaagggtgaatctacctttatggtggaacttaatgag
acttccgacatcctcagatctgcgacgtcacgatctctcatcattctagacgagctaggt
cgtggaaccagtacgttcgacggtgttgctatcgccgaggcagtgcttgactatgtaatc
cgtgacatacagggcttgacgctgtttattactcactaccagcacctttccaagcttcac
tcgcgcttcacaaacggcgagctgaagaacgtgcacatgtcatttgaggagcgcgacggc
gggagagaagttgtcttcttgtacgaggttgctgaaggaaccagccatcgttcgtacggg
ctcaatgtcgcacggcttgcaaaggtaccagagaaggtcatcgatgttgccagtgtgaag
agcagcgagctggaagacaacatgacagcctgcaagatgggcaatttatcccgtctaatg
aagggtataatgaacgataactccgagcaaagtcttgataggcttgttgagagtattgag
caactgtaa
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