Ascochyta rabiei: EKO05_0009098
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Entry
EKO05_0009098 CDS
T09445
Name
(RefSeq) 3'-5'-exoribonuclease
KO
K12587
exosome complex component MTR3
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0009098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009098
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
EKO05_0009098
SSDB
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Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
62217275
NCBI-ProteinID:
XP_038795708
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All DBs
Position
16:complement(join(551814..552637,552775..552922))
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AA seq
323 aa
AA seq
DB search
MATNTDRRRNNAPSGGTHAPVFSRTLREPEYLQTLRPTRTRGPNELRRIFLQTSIIPSAS
GSAYLEIPSLSPSSSSTLIPPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFAT
RHRRGYIRDSTERDLGVHLETALRGVIIGERWPKSGVEVVITILEEDEDGWWGDTHASGS
GWGLLNVLAGCITVASAAITDAGIDCVDMVCGGVAAIVRNPDSKLENDLLRVLDPCPAEH
KQVIAACAVGYLASRDEVTEIWMKGDIGPDPDALIEGATHAAVGSLAVVKEVLLEAVQAK
FREESESGEGALKRKAQDVEMTG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaatacagatcggagaagaaacaatgcgccgagcggcggcacacatgcgcca
gtgttttctcggacgctcagagagccagaatacctccagacattgaggccgacaagaaca
agagggccaaacgagctccgcaggatcttcctacaaacttccatcataccctccgcctca
ggctctgcgtacctcgaaataccttctctgtccccgtcgtcatcgtcgacacttatccca
cctacatcctctctcaagatcaccgcttcgatccagggacccaagccattgccccgcagc
gcacccttcagtccctctctgctcctcacaactacagtcaagtttgcgccttttgcgaca
cggcacagacgaggctacatacgcgatagcacggagcgtgacctcggcgtacacctggag
acagcattaaggggtgtaataatcggcgaacgttggcccaagagtggggttgaggtggta
attacgattcttgaggaagacgaggatggctggtggggcgatactcatgccagtgggagt
ggctggggtctgttgaatgttttggcggggtgtatcacagtcgctagcgcagcgatcaca
gacgctgggattgactgtgtggacatggtgtgcggaggcgtcgccgctatcgtccggaat
ccggattcaaagttggagaatgatctgctgagagtactggatccttgcccagcagagcac
aagcaggtcatcgcagcatgtgcagtgggatacttggcttcgagagacgaggttacagaa
atctggatgaagggagatattggccccgatccagatgctctcatcgagggtgctacacat
gctgctgtcggcagtttagcggtcgtgaaagaggtgctccttgaagctgtacaggcaaag
ttccgagaagaatccgaaagtggcgagggagcactgaagaggaaggcccaagatgtggag
atgacaggttga
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