Ascochyta rabiei: EKO05_0009184
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Entry
EKO05_0009184 CDS
T09445
Name
(RefSeq) DNA topoisomerase 2-associated protein pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0009184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009184
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EKO05_0009184
mRNA degradation factors
5'-3' decay
Decapping complex
EKO05_0009184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
62217356
NCBI-ProteinID:
XP_038795789
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All DBs
Position
16:complement(join(749090..751595,751670..751791))
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AA seq
875 aa
AA seq
DB search
MSFFGFDPSLPRDRGHQPSAPGFGQHDAFAGFSGGAADDDVIDFEETYQGLGGRLDDADD
AFNDDTFGGDGPATQQSVGKDFDFAGQTSKISNTMQEEQMLYQARQGFSRPAPQQQRPPV
PQASKPTRTGYESYKDPEYIPQLEARADIWGLKPKQPAAQRQQQPEYQPSPVQYSSSPAQ
PAGGSRKMMSLDEVEAMMRGHGISNEARATPPVQPPPGMGYPQQYPQQHQQQFYQGQPPF
PGMPPGFPGQHAPQILQRPQQHQFQQPPPQQFQQRQGPPQQQQQQQQQFHAELPGQSAQA
PTPQQPTILQRQKPEPAAQQQMGASPATQPQGPPTQPRQILQNPNRLSGQGQPMAQPGQP
AQQQMAGSAPGQHNRGASFPIITHPEQLLNLSEAERAAFLEEDAKRAKRNHKIAQLAKDN
GLMTPQDKNFITRIQLQQLMTATGNLEERDPEAAIAEDFYYQVFSQIRGAPRQNPQQPAS
QFAQTYLFQTNNRFGNRRHGRGGDNHMQRMEQQIQRAVEAAKARPKAKQLVVEGSLGKIA
FSNSKTPRPLLNIKRPETGDKPKPKTSIADRKDALRNIEAVYLTLMQMEDHERALPPPIN
ESSDPEAIQAHMEWRSKIELLHKKLWLATKIMEPINPHAQAAHPFIQILSHAKGKKVIPR
LFRHIDEQERITVVTMIVVHLDGLAVVGHAVATPDEPLSAAIREEVELFSQTVMPPLFAH
ISESPLNIIIGLLGLILDRTNLHVVARTKIGLSLLTILISRAELLKQSAPEIDAGDWDQW
TVLYNRLFDTIEPVLPYLFPGTINDTDDMYIWQFLAAMGVGASPEQQQRLVIGVKDRVME
TVSVSKALPVEMAGARLANVNLFMRAIGLDVELLG
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcttcggctttgaccccagcctgccaagggaccgcggccaccagcccagcgcg
ccaggcttcggacagcacgatgcctttgccggcttcagtggaggggcagccgacgacgat
gttatcgacttcgaggagacgtaccaaggcctaggcgggcgcctcgacgatgccgacgac
gccttcaacgacgataccttcggcggcgacggaccggccacccagcagagtgttggcaag
gacttcgacttcgcaggccagacgtccaaaatctcaaacacgatgcaggaagagcagatg
ctctaccaggcgcgccagggcttctccaggcctgccccgcagcaacagcgaccgcccgtc
ccacaagcctcaaagcctaccaggaccggctacgagagctacaaggaccccgagtacatc
cctcagctggaggcgcgtgccgatatctggggcctgaagccaaagcagcctgcagctcaa
cgccagcagcagcccgagtaccagccatcacctgttcagtactcgagcagccctgcccag
ccagctggtggctcaaggaaaatgatgagcttggacgaggtcgaggccatgatgcgtggt
cacggcatcagcaacgaggctcgagctacgcccccagtccaaccgcctccaggcatgggt
taccctcagcaatacccgcagcagcaccagcaacagttctaccagggccagccaccattc
cctggtatgccgcccggcttccctggccagcatgctccgcagatcttgcagcgtcctcaa
cagcaccagttccaacagccgccgccgcagcagtttcagcaaagacagggccctccccag
cagcaacagcagcagcagcagcagttccacgccgaacttcctggccaatcagcgcaagca
ccaacgcctcaacagcccaccatcttgcagcgacaaaagcctgagccagctgcacagcaa
cagatgggcgcttcacctgcgactcaaccgcaaggcccaccaacccagcctcggcagatc
ctccagaaccccaaccgcctgtctggccagggtcaaccaatggctcagcccggtcagcct
gcccaacagcaaatggctggaagtgcccctggacaacacaacaggggtgcttcgttccct
atcattacccatccggaacagctgctcaacctgtccgaggccgagcgtgcagctttcctc
gaagaggatgccaagcgtgcaaagcgtaaccacaagattgcgcagttggccaaagacaac
ggtctgatgacgcctcaagataaaaacttcattactcgcattcagctacagcagctcatg
actgccacaggcaatcttgaggagagagacccggaagccgcgattgctgaagacttctat
taccaagtcttcagtcagatccggggtgctccacgccaaaaccctcagcagccggccagc
caatttgctcagacttatctctttcagaccaacaacaggttcggcaaccggagacacggc
cgcggcggtgacaaccacatgcagcgtatggagcagcagatccagcgtgcggttgaagct
gccaaggccaggcccaaggctaagcagctcgtcgtcgaaggcagtctcggaaaaattgcc
ttcagcaactccaagactccgcgacccctcctcaacatcaagcgtccagagacaggggac
aagcctaagcccaagacctcgatcgccgaccgcaaggatgccctgcgcaatatcgaggct
gtctacctcacactgatgcaaatggaggatcacgaacgagctttgccacctccgatcaac
gagagtagcgacccggaggccatccaagcgcacatggaatggcgctcgaagattgagttg
ttgcacaagaagctctggctagccactaagattatggaacccatcaacccgcacgctcaa
gcggcgcatccctttattcaaatcttgtcgcacgccaaggggaagaaggtcattcctcgt
cttttccgccatatcgacgagcaagagcgcataacagtcgttactatgatcgtcgttcat
cttgacggtcttgccgtcgttgggcatgccgttgccacaccagatgagcccttgagtgct
gctatccgcgaagaggtcgaactattctcgcagaccgtgatgcccccactcttcgcgcac
atctctgagtcgccactcaatattattatcggtcttcttggactgatcctggatcgtacc
aatctccatgtcgtcgcacgcactaagatcggcctgtctctcctgacgattttgatctct
cgtgcggagcttctcaagcagtcggctcctgagattgatgcaggagactgggaccagtgg
accgtgctctacaaccgtctcttcgacacgattgaacccgtgctgccttacttgttcccc
ggcaccatcaacgacaccgacgacatgtatatctggcagttcttggctgccatgggtgtc
ggtgctagccctgagcaacagcagaggttggttattggtgtcaaagaccgtgtcatggag
acggtctctgtcagcaaggctttgcctgtggagatggccggagctcgcttagccaacgtg
aatctgttcatgagggctattggtcttgacgtcgaactgcttggatga
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