Ascochyta rabiei: EKO05_0009335
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Entry
EKO05_0009335 CDS
T09445
Name
(RefSeq) Polynucleotide 5'-hydroxyl-kinase
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
arab
Ascochyta rabiei
Pathway
arab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EKO05_0009335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009335
Enzymes [BR:
arab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
EKO05_0009335
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
EKO05_0009335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
TniB
SRPRB
AAA_16
AAA_7
Arf
Motif
Other DBs
NCBI-GeneID:
62217496
NCBI-ProteinID:
XP_038795929
LinkDB
All DBs
Position
16:join(1210987..1211818,1211975..1212235,1212328..1212635)
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AA seq
466 aa
AA seq
DB search
MLSLPGLNLAAPPAEALSAPASSVTREQDLPANTEYRFEVGFSRTFTVRLRSGTAEYFGT
ELAPSTTYSFQGTKGAIYTWHGCKLELGGEAESDYVAEETPMVSHANLHFALELLRDKSV
ASNNVEMGPRVLVVGSENAGKTALVKTLTSYAVKSGRQPMVINLDPRQGMLSVPGSFSAA
AFSSIVDIEEGWGSSPISGPSPIPVKMPLVYHYGLKDPEEGKLFKPLVTRIALAVTSRLE
EDKASKQAGFIIDSSGTISAGKSGVYENIEHIVSEFSVNILITLGSERLYSDLSRKFSNR
PTEETVSVIRLDKSGGCVDRGEEYMKALRHSQIREYFFGHGEDALAPSSMTADYSDLNIF
RVIETEPNPFAAGDAEEYNPAGSTRELYERVTPSSAIQNKLFAITTASPNDKHEVIRDSS
VRGYIYVADVDEGKRKVRLLSPQPGHLPGSAMVLGSWPEDVAGLVS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgctttctcttccaggcctcaacctggccgcgccccctgccgaggctctcagcgcacct
gcctcgtctgtcacaagagaacaagatctgcccgccaacacggaatatcgcttcgaagtt
ggcttttcccgcacattcacagttcgcctacgctccggcacggccgagtacttcggtacc
gagcttgcgccatccaccacatacagctttcaaggcaccaaaggcgcaatatacacatgg
cacggctgcaagctcgagctaggcggcgaggccgagtcagactatgtcgcagaagaaacc
ccaatggtgagccacgcaaacctacactttgccctcgaattgctgcgcgacaaaagtgtg
gcgagcaataacgtggagatgggtcccagagtccttgtggtgggttcagagaacgctggt
aaaactgcgcttgtcaaaacgctcacatcctacgctgtcaagagcggccgacaacccatg
gtaatcaacctcgacccacgacaaggcatgctgagcgtgccagggtcgttttctgctgct
gccttctcttccattgtagacatcgaggaggggtggggaagcagccccatctccggaccc
agccccattccagtgaagatgccgctagtctaccactatggcctcaaggatcctgaagag
ggaaagttgttcaaacctttggtcacacgcatcgcgcttgctgtcacaagcaggttggag
gaggacaaggcgagcaagcaagctggcttcatcatcgatagctcaggcactatcagtgct
ggcaagtccggggtgtacgagaacatagagcatattgtttccgagttttccgtgaacatc
ctcataaccctcggctccgaacgcctgtactccgacctatcccgcaaattctccaaccgc
cccacagaagaaaccgtcagcgtgatccgcctcgacaaatctggcggctgcgtcgaccgc
ggcgaggaatacatgaaagcgctccgccacagccagatccgagagtacttcttcggtcac
ggcgaggacgccctagcgccaagcagcatgactgccgactacagcgatctgaacatcttc
agagtcatcgagaccgaaccgaaccccttcgccgccggcgacgctgaagaatacaatccc
gctggcagcacaagggagctctacgagcgcgtcacgccgtccagtgctatccagaataaa
ctgtttgctattacgacggcgagcccgaatgataagcacgaggtgattagggatagtagt
gtgagggggtacatctacgtggcggatgtggatgaggggaagaggaaggtcaggctgtta
agtcctcaacctggacatttgccggggagtgctatggtgctggggagttggcctgaggac
gttgcggggcttgttagttga
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