Ascochyta rabiei: EKO05_0009498
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Entry
EKO05_0009498 CDS
T09445
Name
(RefSeq) Flap-structured DNA-binding and RNA-binding protein
KO
K27407
RNA-binding protein VTS1
Organism
arab
Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009498
04131 Membrane trafficking [BR:
arab04131
]
EKO05_0009498
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
EKO05_0009498
Membrane trafficking [BR:
arab04131
]
SNARE
SNARE associated proteins
Others
EKO05_0009498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vts1
SAM_2
SAM_1
Motif
Other DBs
NCBI-GeneID:
62217940
NCBI-ProteinID:
XP_038794891
LinkDB
All DBs
Position
17:join(352843..353329,353387..354756,354805..354852)
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AA seq
634 aa
AA seq
DB search
MAANRNSTPEGSSSLRPPVNRTSLGAGHHLRASADTGGFSSPLANRGIRPASEVYFGRQN
TQSGNPDEMERAAQQWLADIDQYENTLEDMATATLDQDFKDELSAIEQWFRVLSEAERTA
ALYALLQQTTQVQIRFFIQVLQQMSKSLPMSGVLSPASFGEKDPMTQKLSDAMSKLSTGE
NRHSLMGRPPPSPGAGKRASGLDPSTIHRMFPDAAAAIAKQKSDFTEVVGVPPASNRNSI
IGGDRTSMLAPTISAPEDTNARENVPPASPWNEAQSVQRPKSSGQQHSQSQSQSQSQSQS
QSQSQPQPQSQQPAMGQFTAPPPSAGLRSPRLPLQNDSSHVQTTTLNALEANSSAMPLLS
PAYAPGGSWASQLSTPMVANFGQQANQADMVANATAMKLAALSTVNNRIQLDDVRKYRRA
RSTDGHGAGNAPMSPGFPPMGNNILMTNELGQVLTPQQAATLQAHQLAAMNGRRSRPASP
GIAMQGAMAGMGSFTSPQANGFLAADYANAGLMSNGMGSLNLSQFGLGGGFDNHNSGFLG
DEINRGRSPRGRRGSSKPPEDPTDPSLLQDIPNWLRSLRLHKYTDNLKDLKWQELVELDD
AGLEARGVNALGARRKMLKVFEQVQEAKNEGKLR
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaccgcaacagcacccccgagggctcgtcctcgctgcgcccgcccgtcaac
cgcacctcgctcggcgccggccatcacctgcgcgcctcggccgacacgggcggcttctcc
tcgcccctggccaaccgcggcatccgccccgcctcggaggtctactttggccgccagaac
acgcagtcgggcaacccggacgagatggagcgcgccgcccagcagtggctcgccgacatc
gaccagtacgagaacacgctcgaggatatggccaccgccaccctcgaccaggacttcaag
gacgagctgagcgccatcgagcagtggttccgcgtcctcagcgaggccgagcgcaccgcc
gccctctacgccctgctgcagcagaccacccaggtccagattcgcttcttcatccaggtc
ctgcagcaaatgtcaaagagcctgcccatgtccggcgtcctctcccccgcaagctttggc
gagaaggaccccatgacccagaagctgagcgacgccatgagcaagctcagcaccggcgag
aaccgccactccctcatgggccgcccgcccccctcccccggcgccgggaagcgcgcctcg
ggcctcgacccctccaccatccaccgcatgttccccgacgctgccgctgccatcgccaag
caaaagtctgacttcaccgaggtcgtcggcgtcccgcctgcctccaaccgcaacagcatc
atcggaggcgaccgcacctcgatgcttgcacccaccatctccgcgcccgaggacaccaac
gcaagggagaacgtgcccccggcctccccctggaatgaggctcagtccgtccagcgtccc
aagtcctctggtcagcagcactcgcagtcgcagtcgcaatcgcagtcgcagtcgcagtcg
cagtcgcagtcgcagccgcagccgcagtcacagcagcccgccatgggccagttcaccgcc
cctcccccgtccgccggcctccgctctccccgcctccccctgcaaaacgacagcagccac
gtgcagaccaccacgctcaacgctctcgaggccaattcctccgccatgcccctgctgtcg
cccgcctacgcacccggtgggagctgggcctcgcagctcagcacacccatggtcgccaac
tttggacagcaagccaaccaggccgacatggttgccaatgccacggccatgaagctcgcc
gccctgtctaccgtcaacaaccgcatccagctggacgacgtccgcaagtaccgccgcgct
cgatccacggacggccacggagctggaaacgctcccatgtcgccaggcttcccgcccatg
ggcaacaacatcctcatgaccaacgagctgggccaagtgctgactccccagcaagccgcc
acgctgcaggcccatcagcttgctgccatgaacggccgccgctcccgtcccgcctcccct
ggcatcgccatgcaaggtgccatggctggcatgggcagcttcacctccccgcaggcgaac
gggttcctggccgccgactacgcaaacgccggcttgatgagcaacggaatgggctctctg
aacctgagccagtttggccttggcggaggcttcgacaaccacaacagcggcttcttgggc
gacgagatcaaccgtggccgctcgccccgcggtcgccgtggcagctccaagcctccagag
gaccccaccgaccccagccttctccaggacatccccaactggcttcgtagtctccgtctg
cacaagtacaccgacaacctcaaggacctgaaatggcaggagcttgtcgagctggacgac
gcaggcctcgaggcgcgtggcgtcaacgccctgggcgccaggaggaagatgttgaaggtc
tttgaacaggttcaagaggccaagaacgaaggcaagctccgatag
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