Ascochyta rabiei: EKO05_0009517
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Entry
EKO05_0009517 CDS
T09445
Name
(RefSeq) mRNA 3'-end-processing protein rna14
KO
K14408
cleavage stimulation factor subunit 3
Organism
arab
Ascochyta rabiei
Pathway
arab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EKO05_0009517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009517
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
EKO05_0009517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_PRP39_C
NRDE-2
TPR_CcmH_CycH
HEAT_RRP12_N
Motif
Other DBs
NCBI-GeneID:
62217956
NCBI-ProteinID:
XP_038794907
LinkDB
All DBs
Position
17:complement(join(420700..421529,421579..422626,422681..423112,423160..423996))
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AA seq
1048 aa
AA seq
DB search
MADDAELAFLRSQEQEYDPAAAWPAADDEMPADDATGEEEYDPTQNMDVAQEPVQPEQSA
SMPQSAANSPSLADNQGEDAVKPVSTETSAAPTPAKQPRTIGGFVDESEDEDEEPVAAPK
VAAPALLRASETAETPQRSITNTPNNTLPTPDVQLHSAQDQGASSISASVAVNELAPSIA
SVPVNGTTPVPDATKPADLLTTDPARQVTASVTPAPPSASLPKARLPQDRIGILNDRIQE
DPRGDIEAWLSLIEEQRKRHKHDEAREVFNRFLDQFPTAGEIWVEYINFETELDELARVE
QLFGRAVPKGAYVPVFSCYIDFVRRRFNLTNDATGKSRETIIMAYEFVLDQVGIDINAGK
LWIDYIELQKTAPGVLGGTNWQDMQKMDTLRKLYQRAVSIPTGATLEIWRDYDRFEMGLN
KVTGRKNLQEKSPSYMTARSAINVLDNNITRGINKTTLPRLPPAPGFDGYDEYMNQVKLW
KQWIQWEKSDPLECAIDDRALYNKRVLHIYRNALRPLRFWPELWYDAAEWCFENGLQTDG
DKFLDDGIEANPESCLLAFKKGNQIELSTDFEDGQAGIIAKGNAVKKPYSTLLDTLYDLT
AKTKKREEHSVARAKEAFEAQKAADDAARAIAQNTEDGDEDDEAKATRRAQEKEAAFNAQ
VHAISAGYNAQILTLKKTLTFAWIALMQATRRVQGKGGNNADVPGFRGIFTEARRKGKLL
SEAYVASAQIEHHCYQDPAAGKIFERGMKLFPEDEQFALEYIKHLIKLNDSTNARAVFET
IVGKLTAKPENIARTKPLFLFFHEYEAHFGELAQITKMEQRMATLFPEDPQLQRFSRRFA
SPTFDPTNVRPIISPRTQMMPVMPAMPNIMPSVEEAMPNAPPQVQAQEQRMASPAQNILN
SPRLAHLPIVTNSPKRPLEDGDESAQPRKLARGESPLKGAAGRRLDAARRNMAANGNTPI
GLPHGPTPLPREINFLLGIIPPAHTYRETRFKPEVMVNMLRNIAAIPIPTLPAHAQVPPQ
RWGTTATTAQQLQSIQEKYGNPGHAWPQ
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacgcagagctcgctttccttcgatcgcaggagcaggagtatgaccctgct
gcagcctggcctgcagctgacgacgagatgcctgccgacgacgcaactggtgaagaagaa
tacgaccctacccagaacatggatgtcgcacaagagcccgttcagcccgagcaatcggcg
tcaatgccgcagtcggctgcgaactctccttccttggccgacaaccagggtgaggacgcc
gtgaaacccgtctctacggagacatctgctgcgcccacaccagcgaagcagccgcgcacc
attggagggtttgtcgacgagagcgaggacgaggacgaggagcctgttgcggcgccaaag
gtggcagcccctgcgttactgcgcgcctctgagactgcagagactccgcagcgttcaatt
acaaacactccaaacaatacacttcccacaccagatgtacagttacatagtgcacaagat
cagggtgcttcatccatctctgcttctgtcgctgtcaatgagcttgctccctctattgct
tctgttccagtcaatggcacaacgcctgttccagacgctactaagccagcagatcttctg
actaccgaccctgctcgccaggttaccgcttccgtaacgcccgctcctccttctgcttct
ctccccaaggcccgtctgcctcaggatcgcattggtattctcaacgaccgcattcaagag
gatccccgtggtgacatcgaagcatggttgagtctaattgaggagcaacgtaagcgacac
aagcacgatgaggcacgcgaggttttcaaccgtttcctagaccaattcccaactgcaggc
gagatatgggtcgaatacatcaatttcgagacagagctagacgaacttgcaagggtggag
cagttgtttggcagagctgtaccgaaaggtgcctacgttcccgtgttctcatgctacatc
gattttgttcgtcgccgcttcaatctcacaaacgatgctaccggcaaaagccgagaaaca
atcatcatggcatacgagtttgtgcttgaccaagtgggtattgacattaacgccggtaag
ctttggatcgactatattgaattgcaaaagactgctcctggtgtacttggcggcacaaat
tggcaagacatgcagaagatggacactttgcgaaaactatatcaacgggcagtgtcaatt
cctactggtgcaactctggagatctggcgtgattacgatcggttcgaaatgggcctcaac
aaagtcacgggccggaagaacctccaggagaagtccccatcctacatgaccgcacgaagt
gccatcaatgtattggataacaacatcacacgcggcatcaacaagacaacattaccaagg
ttgccgccagcacccggattcgacggctacgatgagtacatgaaccaagtcaagctatgg
aagcagtggatacagtgggagaagagtgatccgcttgagtgcgcaatcgatgatcgtgcc
ctgtacaacaagcgtgtgttgcacatctacaggaatgccctaaggccacttcgcttctgg
ccagagctttggtatgacgcggctgaatggtgttttgagaacggtctgcaaacggatggc
gacaaattcttggatgatggcattgaggccaaccccgagagttgcctgttggccttcaag
aaaggaaaccaaattgaactcagcactgactttgaagacggccaggcaggtatcattgct
aagggaaacgctgtcaagaagccttacagcacgctactggataccctctatgatctcact
gcgaaaacgaagaagcgtgaggagcattccgttgctcgcgccaaggaagcttttgaagct
caaaaagctgccgatgatgccgcccgggctattgcacaaaacacagaggacggcgatgag
gacgatgaggcgaaagccacaaggcgagcacaagagaaggaggccgccttcaacgcgcag
gtgcacgccatctcagcaggatacaacgcacagatccttacgcttaagaagaccttgaca
tttgcgtggattgcactgatgcaagcaaccaggcgcgtgcaaggcaagggtgggaacaat
gccgatgtgcctggcttccgtggtatctttacagaagcgcgcagaaagggcaaactgctc
agtgaagcatatgttgccagcgcacaaatcgaacaccactgttaccaagatccagctgca
ggaaagatcttcgagcgcggcatgaagctgtttcctgaggacgagcagtttgcgttggaa
tacatcaagcacctcatcaagctgaatgactcaaccaatgcacgagccgtgttcgagacc
atcgtaggcaagctgacggcaaagcccgagaacatcgccaggacgaagcccttgttcttg
tttttccatgagtatgaagcgcacttcggcgagctggcccagatcacaaagatggagcag
cgtatggccacactcttccctgaggatccacagctgcagcgcttctctcgtcggttcgca
agcccaacattcgacccaacgaacgtgcgcccgatcatctcgccaaggacgcaaatgatg
cctgtgatgccggcaatgcccaacatcatgccttctgttgaggaagctatgcccaacgca
ccaccccaggttcaagcacaagagcagcggatggcatcacctgcacagaacattctcaac
tccccacgtctcgcacatctgcccattgtcaccaactcacccaaacgtcctctcgaagac
ggtgatgagagcgcacaaccccgcaaactcgcacgtggcgagtcaccgctcaagggcgct
gcaggtcgtcgtctcgatgcagcacgacgtaacatggctgccaacggtaacacacctatc
ggtttacctcatggtcctacccctctcccccgcgagattaactttctactcggcatcata
ccgcctgcgcacacataccgcgagactcgtttcaagccagaagttatggtgaacatgttg
cgaaacattgcagccatcccgataccgactcttcctgcacatgcgcaggtgccgcctcag
cgttggggtactactgcgacgacggcgcaacaactgcagagcatacaggagaagtatggc
aatccagggcatgcttggccgcaatag
DBGET
integrated database retrieval system
