Ascochyta rabiei: EKO05_0009564
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Entry
EKO05_0009564 CDS
T09445
Name
(RefSeq) Transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
arab
Ascochyta rabiei
Pathway
arab03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
EKO05_0009564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arab03021
]
EKO05_0009564
03036 Chromosome and associated proteins [BR:
arab03036
]
EKO05_0009564
Transcription machinery [BR:
arab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
EKO05_0009564
Coactivators
SAGA/TFTC/STAGA complex
EKO05_0009564
Chromosome and associated proteins [BR:
arab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
EKO05_0009564
STAGA complex
EKO05_0009564
TFTC complex
EKO05_0009564
SAGA complex
EKO05_0009564
SLIK complex
EKO05_0009564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SCAP
WDR55
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_Nup120_160
LisH
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
PROPPIN
DUF2283
Motif
Other DBs
NCBI-GeneID:
62218004
NCBI-ProteinID:
XP_038794955
LinkDB
All DBs
Position
17:complement(join(553108..555141,555367..555534))
Genome browser
AA seq
733 aa
AA seq
DB search
MSGPPGPGPARAMSVGTNGPPSAGLPPHSMTPQQSTGPPPPPTTSGPQSQQNLNQIVLEY
LSKKGYVRTEAMLRKESEPQPNGQPLVSGSTETGGAKYTKSFELLRKYTEDNLDLYRPEL
RKLLWPVFVYSFMDLVRDYFTKDAETFFATYQNQFERDHGDEIKTLRQVRLPSHLTESNI
AKLYTENKYRLTLTTMPFYNLIQFLESKMFEGGQALMDIVRDHLNIVTVDRTATAEKSIA
AILAGGQGEDELPAEDEGIPGHNPGHPLTSRHDPEADAARIRLQLGPYPQDQDLQDDVRA
TLQDEDAKNAPKPGQSSLVDEYEQRIKREPTEDGPSRDTVPLPPSLARDVSMEVAKIMEY
RDRYKMEGRTGGVGPAVSVTMYTFHNTYDSINCIEFSGDNQLVAAGMAESYIRVWSMDGS
PLTSSLPESNTQPSSSRRLVGHAGPVYAVSFSPSTSNHVEGGPPTNTQFLLSCSEDKTVR
LWSLDTWTCLVAYRGHDNPIWDLQWGPYGHYFLTGSNDRTARLWSTDHIEPLRIYVGHDN
DVDCVAFHPNNLYVFTGSCDRTVRMWHISGGNCLRLFTGHTGNVTAIACSPDGKTLASAD
DVGNIVLWNLETGRRRKRMRGHGKGGIWSLSWSVESSVLVSAGADKTVRVWDVLQETVES
GGKGTDGAAKTDGALTTKGASGTTVTTKKAAKETGISADQISAFPTKDSPVYKVQFTRMN
LVLAGSAYLPQRV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcccaccggggccagggcctgcgcgcgccatgagcgtaggcacaaacggccct
cccagcgccggcctcccaccacacagcatgacgccgcaacagagcaccggccctccgccg
ccgccgaccacctcggggccccagtcgcagcagaacctgaaccagatagtgctcgagtat
ctctccaagaagggctatgtgcgtaccgaagcaatgctccgcaaggagtccgaaccccag
ccgaacggccagcctctcgtcagcggcagcacggagacaggcggtgccaagtacacaaaa
tcgttcgagctgttgcgcaaatacacagaagacaacctggatctgtacaggccagaactg
cggaagctgctgtggcccgtcttcgtctactccttcatggacctggtgcgcgactacttc
accaaggatgccgaaaccttctttgcaacctatcagaatcagttcgagcgcgaccatggc
gatgagatcaagacgctccggcaggtgcgcttgccctctcatctcacagagagcaacatt
gcgaagctatacaccgagaacaagtaccggttgaccttgaccacgatgcccttctacaac
ctgatccagttcttggagtcgaagatgtttgagggcggccaggcgctcatggacatcgtt
cgggaccacctgaacatcgtcaccgtcgatcgaacagcgactgcagagaagagcatagca
gcgatcctggcaggaggacagggagaggatgagctgccagcagaagacgaaggtattccg
ggacacaaccccggtcatccgctcacgagccgccacgatccggaagctgatgctgcacga
atccgcctgcagcttggcccatacccccaggatcaagacctgcaagacgatgtccgagcg
accctgcaggacgaagacgccaagaacgcgcccaagcccgggcagtcatctttagtggac
gagtacgagcagcgcatcaagcgagagccaacggaagatgggccttcacgtgacacagta
ccattgccgccgtcgttggcgcgcgatgtctccatggaggtggccaagatcatggagtac
cgtgatcgctacaagatggaaggtcgcaccggtggcgttggtccggctgtcagcgttacc
atgtatacctttcacaacacatatgacagcatcaactgcatcgagttctccggcgacaac
cagctcgtagcagctggcatggccgaatcctacatccgcgtttggtccatggacggcagt
cctctcacatcctcgttacctgagagcaacacacaaccttcttcatcgcgacgcctcgtt
ggccatgccggcccagtctacgctgtctccttctcgccttctacctcaaaccacgtcgag
ggcggcccacctaccaacactcaattcctcctctcctgctccgaagacaagaccgtccga
ctgtggtctcttgacacatggacctgtctggtcgcttaccgcggccacgacaaccctatc
tgggatctccagtggggaccatatgggcactacttcctcactggctccaatgaccgcacc
gcgcgactatggtccactgatcacatcgagccgttacgcatctacgtagggcacgacaac
gatgtcgattgtgttgcattccaccccaacaatctctacgtcttcaccggatcttgtgat
cgcaccgtgcgtatgtggcacatctccggtggcaactgcctacgtctcttcaccggtcat
actggcaacgtgacagctattgcttgctcgccagatggcaagaccctcgcatccgcagac
gatgtgggtaacatcgtgctgtggaacctggagacaggacgtagacgtaagcgcatgcgc
gggcacggcaagggtggcatttggtcactttcgtggagtgtagagtctagtgtactcgtt
tccgccggtgcagacaagactgtgcgtgtctgggatgtcctacaggagactgttgagagt
ggtggcaagggcacagatggcgcagccaagacagacggtgcgcttacaacaaagggcgcg
agtggcactacggtcacaacgaagaaggcagcgaaggagacgggcatatcggcagatcag
atcagcgcattccccacaaaggactcgcccgtctacaaggtccaattcacgaggatgaac
ttggtgctagcaggaagtgcatacctgccacagcgagtttag
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