Ascochyta rabiei: EKO05_0009660
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Entry
EKO05_0009660 CDS
T09445
Name
(RefSeq) RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0009660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009660
03036 Chromosome and associated proteins [BR:
arab03036
]
EKO05_0009660
Enzymes [BR:
arab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKO05_0009660
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
EKO05_0009660
mRNA degradation factors
5'-3' decay
Decapping complex
EKO05_0009660
Chromosome and associated proteins [BR:
arab03036
]
Eukaryotic type
Gene silencing
piRNA pathway
EKO05_0009660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
62218090
NCBI-ProteinID:
XP_038795041
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All DBs
Position
17:join(799446..799562,799686..801113)
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AA seq
514 aa
AA seq
DB search
MTSQITDQLAATKLNDAPSEANWKEGLTAPAKDARPQTEDVTATKGLEFEDFFIKRELMM
GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKNPKTQALI
LVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSEPVHIIVGTPGRILDLA
GKGVADLTACQIFVMDEADKLLSPEFTPVIEQLLGFHPKDRQVMLFSATFPIVVKDFKDK
HMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFNKLQINQSIIFCNSTNRVELL
AKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD
FPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEIQPIPQVIEKNLYV
YESPDTIPRPISNSQPRPQDQVQRQPQEGDGSMARAQGRQGYRGGRGGGGQYQGQRRGPS
QGQNMPPQQTQQNQQRQNGHNPQRNPRQPPAGPA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgacctcacaaatcaccgaccagctagcagcaaccaagctgaacgatgccccatcggaa
gccaactggaaggagggactgacagcccctgcgaaagacgcacggccacagactgaagat
gtaaccgcaaccaagggccttgagtttgaagacttttttatcaagcgcgagcttatgatg
ggcatcttcgaggcaggcttcgagaagccatcgcctatccaggaagagacaattcctgtt
gccctgaccggacgagatatcctcgcgcgagcgaagaacggtaccggaaaaactgcagcc
ttcgttatccccactctcgagcgcgtaaacccaaagaacccaaagacacaggcgctcatt
cttgtgcctactcgagaactggctcttcagacttctcaagtctgcaagactctaggaaag
cacttgggtatcaacgtcatggtttccacgggaggaacaggactcaaggacgatatcatc
cgactgagcgaaccagtccacatcattgttggaacgcccggaagaatcctggatcttgcg
ggcaagggcgttgccgaccttacggcttgccagatattcgtcatggatgaagctgataag
ctgttgtctcctgaattcacgcccgtcatcgaacagcttcttggctttcatcccaaggat
agacaggtgatgctgttcagtgctaccttccctattgtcgtcaaagacttcaaggacaag
cacatgaactcgccatacgagatcaacctgatggatgaactgacactgcgcggtatcacg
caatattacgcgtttgttgaagagaagcagaaggtgcactgcttgaacactcttttcaac
aagctgcaaatcaaccaatcgatcatcttctgcaactctaccaaccgtgtcgagctactc
gccaagaagattaccgagcttggttattcctgcttctactcgcacgcccggatgcttcag
cataaccgcaaccgcgtgttccacgatttccgtaacggcgtatgccgaaaccttgtctgc
tcagacttgttgactcgtggtatcgatattcaagccgtgaatgttgtcattaacttcgat
ttcccgaagaatgctgaaacatacctgcatcgcattggtcgatctggtcgatttggacat
ttgggtttggccatcaacctgatcaactgggaggacagattcaatctgtacaggatagag
caagagctcggtactgagattcagcccattccccaggtaatcgagaagaacctctacgtg
tacgagtcgcccgacacaatcccccgccctatatccaattcgcagccgcgtcctcaggat
caagttcagcgccaaccccaggaaggagatggcagcatggcgcgagcccaaggccgacaa
ggctaccgcggcggccgtggcggtggtggacagtatcaaggacagcgccgtggcccttcg
cagggacagaacatgccgcctcaacagactcagcagaaccagcagcgtcaaaatggtcac
aacccgcaacgcaaccctaggcaaccgcctgctgggccagcttag
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