Ascochyta rabiei: EKO05_0009702
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Entry
EKO05_0009702 CDS
T09445
Name
(RefSeq) Sm snRNP core protein Smd1
KO
K11087
small nuclear ribonucleoprotein D1
Organism
arab
Ascochyta rabiei
Pathway
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0009702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arab03041
]
EKO05_0009702
03032 DNA replication proteins [BR:
arab03032
]
EKO05_0009702
Spliceosome [BR:
arab03041
]
Complex A
U1 snRNP components
Sm proteins
EKO05_0009702
U2 snRNP components
EKO05_0009702
Complex B
U1 snRNP components
EKO05_0009702
U4/U6.U5 tri-snRNP components
EKO05_0009702
Complex C
U2 snRNP components
EKO05_0009702
DNA replication proteins [BR:
arab03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
EKO05_0009702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
62218130
NCBI-ProteinID:
XP_038795081
LinkDB
All DBs
Position
17:complement(join(900320..900698,900748..900761))
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AA seq
130 aa
AA seq
DB search
MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVTLDTMTV
RGSTVRYIILPDSLPLDTLLIDDAPKPKNKARKEADRGGRGGDRGRGGRGRGGGGRGRGG
GGGRGRGRGF
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgtcaggtttctcatgaaatgccagaacgagactgtcacagtcgagctcaag
aacggaaccatcgtcaacggtaccatcacctctgtttccccgctcatgaacgttgcgcta
cgagccgtcaaatacacacctaagagccgcgacaccgtaactctcgacaccatgaccgtg
cgcggttcgacagtccgttacatcatccttcccgactcgctgccattagacacgcttctc
attgacgatgcgccaaagcccaagaacaaggcgaggaaagaggcggaccgaggaggccgt
ggaggtgaccgagggcgcggtggacgaggccgtggcggcggcggtcgtggacgtggtggt
ggtggtggacgtggccgtggccgaggattctag
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