Ascochyta rabiei: EKO05_0010174
Help
Entry
EKO05_0010174 CDS
T09445
Name
(RefSeq) tRNA-intron lyase
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
arab
Ascochyta rabiei
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arab03016
]
EKO05_0010174
Enzymes [BR:
arab01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
EKO05_0010174
Transfer RNA biogenesis [BR:
arab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
EKO05_0010174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
MscS_TM
Motif
Other DBs
NCBI-GeneID:
62218584
NCBI-ProteinID:
XP_038794722
LinkDB
All DBs
Position
18:1157370..1158797
Genome browser
AA seq
475 aa
AA seq
DB search
MTTEDKASEPPVTQVDAAAPHGHKSTSSGPRKPRPKRPNYNEIHAKPLPLDIHPLPAFIP
HNPLSIVRIAITLLSHSLRKPNSHKVSHNAYYSEDTQSIHVTDPASIRALWEQGFWGKGS
LSRSEPQWLLAERRRRGIEASTASTQITQARREERRQFKLERAKAQREAIEQQLRQEGKL
DADGTINDLVDDGVVSESPRGTVYTPEAGHVVGPTGDSIVAEVDKSFADKAPAWGEDASA
TKDDEEIKDIEHLQLTPEEAFFLTYVLGALNVVEGNIVDGNAALPTWYLFRLYSAYASLP
VDDTAVIGLKKAYQYRERLSQKTAALPSTQQIAPDNSFVLKYVVYHHFRSLGWVVRPGIK
FAVDYLLYLRGPAFHHAEFGVQIIPSYSHPYWSETPERVAHRRQKESRDWWWFHRVHRVQ
TAVMKTLVLVYVEVPPPWDGETKQDAFGVDIGKALTMYKVREVVFKRWSPSRNRD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgaggacaaggcgtcggagccgcctgtgacgcaggtcgatgctgctgcgcct
catggccacaagtccacaagtagcggtcctaggaaacctcgcccaaagcgaccaaattac
aatgaaattcacgccaagccactcccgcttgacattcacccattgccagccttcatccca
cataaccccttatccatcgtgaggattgctatcactcttctttcacactcgttgcgaaaa
ccaaactcgcacaaggtttctcacaacgcctactactctgaagacacccagtcgatccat
gtcacggaccctgcatcgatccgcgcgctctgggagcaaggcttctggggcaaagggtcg
ctcagtcgcagtgaaccccagtggctactcgccgaaaggcgcaggcggggtattgaagca
tccacagcaagcacacagatcacccaagcccgaagagaagagcgcaggcaattcaagctt
gagcgtgccaaggcgcaacgagaagccattgagcagcaactgcgccaggaaggcaagcta
gacgcagacggtaccatcaacgacttggtggatgatggtgtcgtctccgagtcaccaaga
gggaccgtatacacgcccgaagctggtcatgttgtgggtccaactggcgactccatcgtc
gcagaggtcgacaagagctttgcagacaaggctcccgcctggggtgaggatgcgtctgct
accaaggacgacgaagaaatcaaggacattgagcatctgcaactcacgccagaagaggcg
tttttccttacctacgtcctaggtgccctcaacgtcgtcgaaggcaacattgtcgacggc
aacgcagcgcttcctacgtggtatcttttccgcctctacagcgcctatgcttcattgccc
gtcgacgataccgcagtcatcggcctaaagaaagcctaccaataccgtgagcgcttgtca
cagaagaccgcagctctacctagcacacagcagatcgctcccgacaactcgttcgtcctc
aaatacgtcgtttaccaccacttccgctccttgggctgggttgtccgccccggcatcaag
ttcgccgtcgactacctgctctacctccgcggtcctgcctttcatcatgccgagtttggt
gttcagatcatcccttcgtactcgcatccttactggtctgagacgccggagcgtgttgcc
catcgcagacagaaggagagcagggattggtggtggttccaccgagtgcatcgtgtgcag
acagcagttatgaaaacactagtgctggtgtatgttgaggtgccgccgccatgggacgga
gaaactaagcaggatgcatttggtgttgatatcggcaaggctctcacgatgtacaaggtt
agagaggttgtatttaaaagatggagccctagcaggaaccgcgattag
DBGET
integrated database retrieval system
