KEGG   Ascochyta rabiei: EKO05_0011251
Entry
EKO05_0011251     CDS       T09445                                 
Name
(RefSeq) pre-mRNA cleavage and polyadenylation factor (CPF) complex subunit
  KO
K15542  polyadenylation factor subunit 2
Organism
arab  Ascochyta rabiei
Pathway
arab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:arab00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    EKO05_0011251
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arab03019]
    EKO05_0011251
Messenger RNA biogenesis [BR:arab03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     EKO05_0011251
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_SCAP MIOS_WD40 PEP5_VPS11_N Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st eIF2A Beta-prop_NUP159_NUP214 Beta-prop_SPT8 NBCH_WD40 Beta-prop_HPS5 Beta-prop_ACSF4 Beta-prop_Vps41 WDR54 Nucleoporin_N
Other DBs
NCBI-GeneID: 62220388
NCBI-ProteinID: XP_038792439
LinkDB
Position
22:join(123746..123803,123859..125786)
AA seq 661 aa
MEREPYQHQFEGGPRARPKRAVTDYGATTVQWMRNRRPRYKHTATAEMERPSASYIVDMQ
PPAARLASAAESIPAKAVHSSLNKVKHPINVVKWTPEGRRLLTGSTSGEFTLWNGMGFNF
ETIMQAHEAAIRCVEYTHTDDWLLSADQTGVVKYWQTNFNNVKEMQAHTEAVRGLAIAPT
DSKFVTCADDTTLKIWDFASSQEEQTLTGHGWEVKSVDWHPHKGLLVSGSKDHQVKFWDP
RTGRCLTTLHGHKNPIAKTIFEPTQGNLLATCARDHTARIFDLRMMRDVLLLRGHEKDII
TMAWHPMHKNLLSTGGVDGSIHHYLLDEQNAPAATAPTLSPYDSADPQNAPAQAIYPAHS
IPYAHDFTVWTLDWHPLGHILASGSNDRVTRFWTRPRPGDTKYPEDRYHIGQAAAEANGT
FDRGHGRRQRAEEEEQEAEDEAEGLVDQKLPSKTAGVGSLPFLPPGLNLPGLAPTNPDGS
SSALPGIGGVSHPGMPPLPPPPTGMNPFAGGPPPPFPGGMPAGMDPSRLAALLQSGAVPP
PPPLAHHGGPPQHQPPFPPQQGAPPQFPPGPPPNFQFPPGMPPGFPPPGFPQGLPPGFPP
PPQGFAPPGIQMAAQNGGPVRGQNGGQNDGQNGWERKRAPLPDQNDALQAEMRQGRYRKA
R
NT seq 1986 nt   +upstreamnt  +downstreamnt
atggagcgcgagccctaccagcaccagttcgagggcggcccgcgcgcgcgaccgaagcgc
gccgtgaccgactatggcgcgacgaccgtgcagtggatgcgcaaccgccgcccgcggtac
aagcacacggccacggcggagatggagcggccgagcgcaagctacattgtcgacatgcag
ccgcccgccgcccgcctcgccagtgcggccgagtcgataccggccaaagcggtgcattcg
tcccttaacaaggtcaagcaccccatcaacgtcgtcaagtggacgcccgagggccgccgc
ctgctcacgggctccaccagcggcgagttcacgctgtggaacggcatgggcttcaacttc
gagaccatcatgcaggcccacgaggcggccatccgctgcgtcgagtacacccacaccgac
gactggctgctgtcggccgaccagacgggcgtcgtcaagtactggcagaccaacttcaac
aacgtcaaggagatgcaggcccacaccgaagccgtgcgtggcctggccattgcaccgacc
gactccaagttcgtcacgtgcgccgacgacaccacgctgaagatctgggactttgcctcg
agccaggaggagcagaccctcaccggccacggctgggaggtcaagtcggtcgactggcac
ccccacaagggtctgctggtctcgggctccaaggaccaccaggtcaagttctgggacccg
cgcacaggccgctgcctcaccacgctgcatggacacaagaacccaatagcaaagaccatc
ttcgagcccacccagggcaacctgctcgccacctgtgcgcgtgaccacaccgcccgcatc
ttcgacctgcgcatgatgcgcgacgtcctgctcctgcgcggccacgaaaaggacatcatc
accatggcctggcaccccatgcacaagaacctcctctccaccggcggcgtcgacggcagc
atccaccactacctccttgatgagcagaatgctcccgctgccacggcgcccaccctctcc
ccctacgactccgccgacccgcagaacgcacctgcgcaggccatctaccccgcccacagc
atcccatacgcacacgacttcaccgtctggaccctcgactggcacccgctcgggcacatc
ctcgcctcaggctcaaacgaccgcgtcacacgcttctggacccgcccgcgccccggcgac
acaaagtaccccgaggacagataccacatcggccaggccgccgccgaagcaaacggcacc
tttgaccgcggccacgggcgccgccagcgcgcagaagaggaagagcaggaagccgaagac
gaagccgagggcctcgtcgaccagaagctcccttcgaaaactgcaggcgttggctccctc
ccattcctgcccccaggtctcaacctgcccggcctcgcgcccacaaatccagacggcagc
tccagcgccctcccgggcatcggcggtgtttcgcatcctggcatgccaccccttccccct
cccccaacaggcatgaaccccttcgccggtggcccaccgccacccttccccggcggcatg
cccgcaggcatggacccaagccgtctggcagccctcctccagtccggcgccgtaccacca
cctcccccgctagcacaccatggcggacctccccaacaccaaccgccctttcccccacag
cagggcgcaccaccacaatttccacccggccccccaccaaacttccagttcccacccggt
atgccgcccggcttccccccacccggcttcccacaagggctgccccccggcttcccccca
ccaccacaaggcttcgcgccgccgggcatccagatggcagcgcaaaacggcggacctgtt
cgcgggcagaatggcgggcaaaatgatggtcaaaacggctgggagaggaagagagcgccg
ctgccggatcagaacgacgcgctgcaggccgagatgcgccaggggcggtatcgcaaggct
aggtag

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