Acidovorax radicis: KI609_02040
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Entry
KI609_02040 CDS
T08078
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arad
Acidovorax radicis
Pathway
arad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KI609_02040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arad03021
]
KI609_02040 (rpoC)
03400 DNA repair and recombination proteins [BR:
arad03400
]
KI609_02040 (rpoC)
Enzymes [BR:
arad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KI609_02040 (rpoC)
Transcription machinery [BR:
arad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KI609_02040 (rpoC)
DNA repair and recombination proteins [BR:
arad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KI609_02040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UCU99616
LinkDB
All DBs
Position
444802..449040
Genome browser
AA seq
1412 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLESIDIDMSIERLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINGKGEGLVFADTGEVQRALDAGEV
ELAAKITVRMTEWTKNKETGEFVPSTSLVETTAGRALLSEILPKGLPFSNMNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPPQKAGIIERSEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVSKVMMAQLSKQKVIDRHGNEVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTSNGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPENRSVLVQAGVMLEEDLIEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVSNTKGELVVIARSGEIVIQDEHGRERERHKVPYGATLTVKADQTVKAGTILANW
DPLTRPIITEFAGQSKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DAQGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPEGRVSEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RIVVENVGESNYIAGEQVERSEILNTNDALQSEGKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDAMDDAERRA
IAEAEAAEMEAQASTSDADTSSNVTATDAAAD
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcactactcgacctgttcaagcaattcacgccggatgagcacttcgatgccatt
cgcatcggcatggcttcgcccgaaaagatccgttcgtggtctttcggtgaagtgaagaag
cctgaaaccatcaactaccgcacattcaagcccgagcgtgacggtctgttttgcgccaag
atttttggtcctatcaaggactacgaatgtttgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgatctggccgccccttgcgcgcatatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgtgacatcgaacgcgtgctgtac
tttgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
agcgaggacgactacgacgccaaacgcaaggaatacggcgacgaattcatcgccaagatg
ggcgccgaaggtatcaaggacctgctggaatccatcgatatcgatatgtcgattgagcgc
ttgcgtggcgacttgacaggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctcgaagcgttcaaaaagtctggcatcaagcccgagtggatggtgctggaagtgctg
cccgtgctgcccccggacctgcgtccgctggtgccgctggatggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggcccctgaaatcatcgcccgcaacgaaaagcggatgctgcaggaagcc
gttgactcgctgctggacaacggtcgccgtggcaaggccatgacaggcgccaacaagcgt
gctctgaaatcgctggccgacatgatcaagggcaagtcgggtcgcttccgccagaacttg
ctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggcccaacgctcaag
ctgcaccagtgcggcctgcccaagctgatggctctggaactgttcaagccctttatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggcggccaagaaagaagtcgaa
tccggcacgccagtggtgtgggacatcctggaagaggtcatcaaggaacaccccgtgatg
ctgaaccgtgcgcctacgctgcaccggttgggtatccaggcctttgagcccatcctgatc
gaaggcaaggccatccagttgcaccccctcgtttgcgcggcattcaacgccgacttcgac
ggtgaccagatggccgtgcacatcccgctgtcggtagaggcgcaaatggaagcccgcacg
ctgatgctggcctctaacaacgtgttgttccccgcatcgggtgaaccctccatcgttcct
tcgcaggacgtggtgctgggcttgtactacgcgacccgtgaccgtatcaacggcaagggc
gaaggcctggtgtttgcggacaccggtgaagtgcaacgtgccctggatgcgggcgaagtc
gaactcgcagccaagatcaccgttcgcatgaccgagtggacgaagaacaaggaaactggc
gaattcgtgccatcgacctcgctggtggaaaccactgcaggccgcgcactgctgtctgaa
atccttcccaagggcctgccgttctccaatatgaacaaagcgctcaagaagaaggaaatc
tcgcgcctcatcaacgtgtccttccgcaagtgcggtctgaaggaaacggtggtgtttgcc
gacaagctgctgcaaaacggcttccgtctggctacgcgcgctggtatctcgattgctatc
gatgacatgctggtgcctccacaaaaggccggcatcatcgagcgctccgagaaagaagtg
aaggagatcgaacagcaatatgtgtccggtctggtcactgctggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtccaaggtcatgatggcccagctg
tccaagcaaaaggtcatcgaccgccacggcaatgaagtggaccaggagtcgttcaactcc
atctacatgatggccgactcgggcgcccggggttctgctgcgcagattcgtcaggtggcc
ggtatgcggggcctgatggccaagccagacggctcgatcatcgaaacgcctatcaccgct
aacttccgcgaaggcttgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctcaagaccgccaactccggttacctgacccgccgtctggta
gatgtgacgcaggatctggttgtcaccgaagaagattgcggcacctccaatggttcgttg
atgcgcgccattgttgaaggcggtgaagtcatcgagtcgctgcgtgaccgtatcctgggc
cgcactgcagccgaagacgtgctgcaccccgagaaccgctctgtgctggttcaagcgggc
gtcatgcttgaggaagacctcattgaggaactcgaagctgccggtgtggatgaggtgaag
gtgcgtacggcattgacctgcgaaacccgctatggcttgtgcgcgaaatgctacggccgc
gatttgggccgcggcggcctgatcaaccttggcgaagccgtgggtgtgatcgctgcccag
tccatcggtgagcccggcacgcagctgaccatgcgtacgttccacatcggtggtgccgct
tcgcgcgctgccatcgcatcgagcgtggaagccaagtccaacggtgtgatcggcttcaac
gccacgatgcgctatgtgagcaataccaagggcgagctggtggtgattgcacgttcaggc
gaaatcgtcatccaggacgaacatggccgcgagcgtgagcgtcacaaggtgccttacggc
gccacgttgacggtcaaggccgaccagacagtcaaggcaggaacaatcctggccaactgg
gatccgctcacgcgccccatcatcaccgagtttgctggtcaatccaagttcgaaaacgtc
gaagaaggtttgactgtggccaaacaggtcgatgaagtgaccggtctgtccacgctggtg
gtgattgatccgaagcgccgcggcgccgccaaggtggtgcgtccacaagtgaagctgatc
gacgctcaaggcaatgaagtgaagatccccggcaccgatcactcggtgaccattggcttc
caggtcggcgcgctgatccaggtgcgcgacgggcaggacgtgggtcctggcgaagtgctg
gcccgtatcccggtcgaaggtcagaagacccgcgacattaccggtggtctgccacgtgtg
gccgagttgttcgaagcccgtacgcctaaggacaagggcacgctggctgaaatgaccggt
accgtgtcgttcggtaaggaaaccaagggcaaggttcggctgcagatcacggaccctgaa
ggtcgtgtgtcggaagagctggtgcccaaggaaaagaatatcctggtgcacgaaggccag
gtggtcaacaagggcgagtccatcgtcgacggacccgcagatccacaggacatcctgcgt
ttgctgggcatcgaagaactgtcgcgctacatcgttgacgaggtgcaggacgtgtaccgt
ttgcagggcgtgaagatcaatgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcattgttgtcgagaacgtcggcgagtcgaactacattgctggtgagcaggtcgagcgt
tccgagatcctcaacaccaacgatgctctgcagtctgaaggcaagatccccgcgacctac
agcaacctgctgctgggtatcacgaaggcctctctgtccaccgactcgttcatctcggcg
gcgtccttccaggaaaccacccgcgtgctcaccgaggcggccatcatgggcaagcgcgac
gagctgcgtggcctgaaagaaaacgtcattgtgggtcgcctgatccctgccggtaccggc
atggcctaccaccaggcgcgcaaggccaaggacgccatggatgatgcggaacgccgcgcg
attgccgaagctgaagctgccgaaatggaagcacaggcctcgacttccgacgcagacacc
agcagcaacgtcactgcaaccgacgcagcggccgactaa
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integrated database retrieval system
