Acidovorax radicis: KI609_04260
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Entry
KI609_04260 CDS
T08078
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
arad
Acidovorax radicis
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arad03016
]
KI609_04260
Enzymes [BR:
arad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KI609_04260
Transfer RNA biogenesis [BR:
arad03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KI609_04260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
ProQ_C
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UCV00009
LinkDB
All DBs
Position
complement(957499..959574)
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AA seq
691 aa
AA seq
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MHALFEEAGKFMAGRILSEADTSAQVELDSGKRVKVKAANILLKFEKPAPAELIAQAQAV
ADTIELDLAWEFAPEDEFGFADLARDYFSENATLIQQAGALFRLYDAPHYFRRAGKGRFK
KASAEILQQALAAIEKKKAVLAQIDDWAAALGRGECPQPIRDQLYKILFKPDKNAPEYKA
VVEASRATHMAPLPLLQKAGAIDSAYQFHWKRFLFDNFPKGTGFPALTAPQPPDDLPLAT
VQAYSIDDSQTTEIDDALSVQGLGTGTVTLGIHIAAPGLAIVPGTPLDQLGRNRLSTVYM
PGYKITMLPDEVVQIYTLDEGRANPAVSLYVTINEATLEITATETKLERVPVVANLRHDQ
LDHIVTEAWLSDPTLQIENTPQRLMELREQLSFLHRLAKSLKAQREVVRGKPENFNRPDY
NFRLVGNNRGEPDGTEQVQISTRQRGAPLDLIVAEAAIVANSTWGLMLADHGVPGIYRSQ
ASMAPGVKVRMGTKALPHAGIGVKAYSWATSPLRRYTDLVNQWQIIACARHGKTAALAAP
FKPKDADLFSIISSFDAAYSAYNGYQAGMERFWTLKYVEQNGITELNATVFKEGPGGSFL
VRADDIPLVFPVLGAQNLPRGARLKVKLGEVDEITLDIHGTVIERLDDPADASDDGPGDD
AEDDDTVAGPIAIAVDVNEAPAEAATAAPAA
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcactgtttgaagaagccggcaaattcatggccggtcgtatcctttccgaggcc
gacacatccgcccaggtcgaactggactctggcaaacgggtcaaggtcaaggccgccaat
attctgctgaaattcgagaagccagccccggctgagttgatcgcgcaggcgcaggccgtg
gccgacaccatcgagctcgacctggcgtgggagttcgcacccgaagacgagtttggcttt
gccgacctggcgcgcgactatttctcggagaacgccaccctgatccagcaggcgggggca
ctgttcaggctgtacgacgcaccgcactatttccgccgcgcgggcaaaggccggttcaag
aaggcgtcggccgagatcctgcagcaggcgctggccgccatcgagaagaaaaaagccgtg
ctggcgcaaatcgacgactgggccgcagccctgggccggggcgaatgcccacagcccatt
cgcgaccagctctacaagatcctgttcaagcccgacaagaacgcgcccgaatacaaggcc
gtggtcgaggccagccgcgccacccacatggcaccgctgccgctgctgcaaaaggcgggc
gccatcgactcggcctaccagtttcactggaagcggtttttgttcgacaacttccccaag
gggacggggtttcccgcactcaccgccccccagccgcccgacgatctgccgctggccacc
gtgcaggcctattcgatcgacgactcgcagaccacggaaatcgacgacgccctgtcagtg
cagggcctgggcaccgggacggtgaccctcggcatccacatcgcagcaccggggctggcc
atcgtgcccggcacgccactcgaccaactgggccgcaaccgcctgtccaccgtgtacatg
cctggctacaagatcaccatgctgcccgacgaggtggtgcagatctacacgctggacgaa
ggccgcgccaacccggccgtgtcgctctatgtgacgatcaacgaagccacgctggagatc
actgcgaccgaaaccaaactcgagcgcgtgcccgtggtcgccaacctgcgccacgaccaa
ctcgaccacatcgtgaccgaggcctggctgtccgacccgacacttcagatagaaaacacc
ccccagcgcttgatggaactgcgcgagcagctatcatttttgcaccgcctggccaaaagc
ctcaaggcccagcgcgaagtggtgcgcggcaagcccgagaacttcaaccggccggactac
aacttccgcctcgtcggcaacaaccgcggcgagcccgatggcaccgagcaggtgcagatc
agcacgcgccaacgcggcgctccgctcgatctgatcgtggccgaagccgccatcgtggcc
aacagcacctggggcctgatgctggccgaccatggcgtgcccggcatctaccgcagccag
gccagcatggcgccgggcgtcaaagtgcgcatgggcaccaaggcgctgccgcatgcgggc
attggcgtcaaagcgtattcgtgggccacatcccccctgcgccgctacaccgacctggtc
aaccagtggcagatcattgcctgcgcgcgccacggcaaaacggccgcgctggccgctccg
ttcaagcccaaggacgccgacctgttctccatcatcagcagctttgatgcagcctatagc
gcctacaacggctaccaggcgggcatggaacgcttctggaccctgaagtacgtggagcag
aacggcatcaccgagctgaacgctaccgtgttcaaggaaggcccgggcggcagcttcctg
gtgcgggcggatgacattccgctggtcttccccgtgctcggtgcgcagaacctgccgcgc
ggcgcgcgcctgaaggtcaagctgggcgaggtggacgagatcacgctggacatccacggc
accgtgatcgagcgcctggacgacccggcggacgccagcgacgacggcccgggggacgat
gccgaggacgacgacactgtggccgggcccattgccattgcggtggacgtgaacgaggcc
cccgccgaagccgctacggcagccccggccgcctga
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