Acidovorax radicis: KI609_06930
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Entry
KI609_06930 CDS
T08078
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
arad
Acidovorax radicis
Pathway
arad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI609_06930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arad03019
]
KI609_06930
03009 Ribosome biogenesis [BR:
arad03009
]
KI609_06930
Enzymes [BR:
arad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KI609_06930
Messenger RNA biogenesis [BR:
arad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KI609_06930
Ribosome biogenesis [BR:
arad03009
]
Prokaryotic type
rRNA processing factors
KI609_06930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
UCV00492
LinkDB
All DBs
Position
complement(1527807..1530956)
Genome browser
AA seq
1049 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRSYFAPGVSPGQARINEVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPNGMSIIARTAGIGRTAPELQ
WDLNYLLKLWTAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAH
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGNISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVAVLMVPNKTLETPN
YKLERLKHDDPRLDHIEASYKLAEEVEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPMAE
PRPEGAARPARSGQRPAAAPAASTPAAAPRPMPAAAPQEQGFFAWIKGLLGFGDTPAPTP
VAAPTPVATPETQGRGEPRRDGRNGESRGRRGGRDGNREGGRDGNRDGNGENRGRRGERP
AEGRAPRDADNRPPRDAERRPEGEAREPREGRNGRDGGRSRRDAEPRNLASGVNGDNTAV
QQPQVEGPNGQTSDSDAVPGQQQPRSERGPRRERGERGERNNRGDRGGERGPRPATAQDK
AANAAMPGDFVDTAPLESLPDLDLTGTDGQPGGHGTQAAGDDQQRRERRSRDRYGRDRRE
RGPRDTSSEAAAPTVQDVDASAQAGTSALAPVQDEAPRRSYFNAPTAESAQPAAFEAPTA
APAVAALPPAPAMPAPIAAPVDAATPVTAAVPAAPAPAPAPAPAKAPVAAAAQAPAAKPT
ATGMPRVQAFTLPIDALQQVAASSGLQWVNSDADKIAAVQAAIAAEPKPLRVPRERPPVV
VVDEGPLVLVETRRDLSAMKLPFEQPPVA
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcagcccgaagagcggcgcctggccatcgtcgac
ggacaaaaactcctcgactacgaaatcgaaattgaagggcgcgagcagcgcaagggcaac
atctacaaagcggtcgtcacacgcgtcgagccttcgctggaagcctgcttcgtcgactac
ggcgaagaccgccacggcttcctgcctttcaaggaaatctcgcgcagctactttgccccc
ggcgtttcgcccggccaggcacgcatcaatgaagtgatcaaggaaggccaggaactgctg
gtccaggtcgaaaaagaagaacgtggcaacaagggcgcagcgctgaccaccttcgtctcg
ctggccggccgctacgtggtgctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcatcgagggcgaggaccgcgccgagctcaaagaagcgatggaccagctcgaatacccg
aacggcatgtccatcatcgcgcgcaccgccggcatcggccgcaccgcgcccgaactgcag
tgggacctgaactacctgctcaagctctggaccgccatcgacggcgccgccaagggcggc
aagggcgccttcctgatctaccaggaatcgagcctcgtcatccgcgcgatccgcgactac
ttcaataacgacatcggtgacatcctcatcgacaccgacgacatctacgagcaagcgcac
cagttcatggcgcacgtcatgcccgagcatgccgcccgcgtcaagcgctaccgcgacgac
gccgcgctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcaattgccatcgggcggcgccatcgtgattgaccacaccgaagcgctggtgtcggtg
gacgtgaactcggcgcgcgccatcaagggcggcgacatcgaggaaaccgctacccgcacc
aacctggaagccgccgacgaagtggcccgccagatgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggaagagagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgttgcgccaggaccgtgcccgcgtgcagttcggcaacatcagcaagttc
ggcctcatggaaatgagccgccagcgcctcaagcccgccttgagcgaaggctcgtccatc
ccctgcccccgctgcggcggctcgggccatatccgcgacacggaaagctcggccctgcag
atcctacggatcatccaggaagagtcgatgaaggacaacacggccgccgtgcactgccag
gtgccagtggaagtggcgtcgttcctgctcaacgaaaagcgcaccgagatcgccaagatc
gaactgaagcagcgcgttgccgtgctgatggtgcccaacaagacgctggaaacaccgaac
tacaagctcgaacgcctcaagcacgacgacccccgcctggaccacatcgaagccagctat
aagctcgctgaagaggtggaagaccccacggccgtgacgcgccgctcgcaagagcccacc
aacaaacagacgccggtgatcaagggcgtgttgcccgacgcccccgcaccgatggccgag
ccccgccccgaaggcgccgcccgccccgcgcgcagtggccagcgccctgctgcggcccct
gcggccagcacgccggcagctgcacctcggcccatgcctgccgcagcgccccaagagcaa
ggtttctttgcctggatcaagggtctgctgggctttggcgacacccccgcgccgacacct
gtggcggcacccacccccgtggcaacccctgaaacgcagggtcgcggtgaaccccgccgt
gacggccgcaatggcgaatcccgtggccgccgtggtggacgcgatggaaaccgtgaaggt
ggccgtgacggaaaccgcgatggcaatggtgaaaaccgcggccgccgtggcgaacgcccc
gccgaaggccgcgcaccacgtgacgcagacaaccgccccccacgcgacgcggagcgccgc
cctgaaggcgaagcccgcgagcctcgcgaaggccgcaatggccgtgacggcggtcgaagc
cgtcgcgacgcagagccgcgcaacctggcctccggcgtgaacggagacaacacggccgtt
caacaaccgcaagtcgaaggccccaacggccagaccagcgacagcgacgcagtgcccggc
caacagcaaccccgcagcgaacgcggcccacgccgtgaacgtggtgagcgcggtgagcgc
aataaccggggtgaccggggcggcgaacggggcccacgccctgccaccgcgcaagacaaa
gccgccaatgcagccatgcctggcgattttgtggacaccgcgccgctggaatccctgccc
gacctggacctgaccgggaccgacggacagcctggcggccatggcacccaagccgcaggc
gacgaccaacagcgccgtgagcgccggtcgcgcgaccgctatggccgcgaccgccgtgaa
cgcggcccgcgcgacaccagcagtgaagccgcagcgcccacggtgcaggatgtcgacgcc
tctgcccaggccggcacctccgccctggcaccggtgcaggacgaggccccacgccgcagc
tacttcaacgcgcccacggccgagtccgctcagcctgcggccttcgaggcgccgactgcc
gcacccgcagtagcagcattgccccccgcacccgccatgccagcccccatcgccgccccg
gtggacgcagcgacgccggtgaccgcagcagtgccagcagcccccgctccggctccggct
cctgcgccggccaaagcacctgttgccgctgcggcacaggcgccggctgccaagcccacc
gcgacaggcatgccccgcgtgcaggcgtttacgctgcctatcgatgcgctccagcaagtg
gcggcctcatcgggcctgcagtgggtgaactctgatgcggacaagatcgcggccgtacag
gctgcgattgccgcagagcccaagcccctgcgtgtgccgcgcgaacgcccccccgtggtg
gtggtggacgaaggcccgctggtgctggtggaaacccgccgtgacctgtcggccatgaag
ctgccttttgagcagcctccggtggcgtaa
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