Acidovorax radicis: KI609_07620
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Entry
KI609_07620 CDS
T08078
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
arad
Acidovorax radicis
Pathway
arad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI609_07620 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arad03019
]
KI609_07620 (pnp)
03016 Transfer RNA biogenesis [BR:
arad03016
]
KI609_07620 (pnp)
Enzymes [BR:
arad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KI609_07620 (pnp)
Messenger RNA biogenesis [BR:
arad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KI609_07620 (pnp)
Transfer RNA biogenesis [BR:
arad03016
]
Prokaryotic type
tRNA degradation factors
KI609_07620 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
DUF5813
S1_2
KH_KhpA-B
OB_RRP5_4th
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
UCV00615
LinkDB
All DBs
Position
1676065..1678317
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AA seq
750 aa
AA seq
DB search
MSIFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKGAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTV
SLNPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLV
VAGTEAAVLMVESEAQQLSEEIMLGAVVFGHDQGNVAINAIHELVRDAGKPAWQWEAPAK
DEALIAKVVALADDKLRAAYQIRNKQARTQACRESYAAVMAALKADGVEFDSVKVEGMLF
DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGT
ERDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALIAVLPTK
EEFPYTVRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDANRFAVL
TDILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA
ATDNAKADEAKRRIEQITAEVEIGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VERVGDYLTEGQIVKVKVMETDEKGRIKLSMKVLSDRPAGGSDRPAPAERGDREPRRDQG
REGGRPQQPADQQQQQQGQPSDGESGQVIG
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagcattttcaataaagtcaccaagaccttccaatggggcgacaagaccgtcatcatg
gaaacgggcgagatcgctcgccaggcctctggcgctgtgctggtgaatatcgatgacacc
gtggtgctggccaccgtggtggcatccaagggcgccaagcccggtcaggactttttcccc
ctgacggtggactacatcgagaagacctacgcagcaggcaagatccccggtagcttcttt
aaacgcgaagccaagcccagcgaacacgaaacactgaccagccgtctgatcgaccgcccg
attcgcccgctgttccctgaaggcttcttcaacgaagtgcatgtggtgatccacacggtg
tcgctgaaccctgaagtggatgccgacatcgcagccctcatcgccaccagcgcagccctg
gccatctctggcattccgttcaacggccccatcggcgccgcgcgcgtgggctacatcaat
ggcgaatacgtgctcaaccccggccagactgcgcgcaagaactcgcagatggatctggtg
gtggcaggtaccgaagccgctgtgctgatggtcgagtccgaagcccagcaactgtctgaa
gaaatcatgctgggcgctgtggtgtttggccacgatcaaggcaatgtcgccatcaacgcc
atccacgaactggtgcgcgatgcgggcaagcctgcgtggcagtgggaagcccctgccaag
gacgaagccctgattgccaaggtggtcgcactggccgacgacaagctgcgcgcagcctat
caaatccgcaacaagcaagcccgcacccaggcttgccgcgagtcttatgccgccgtgatg
gctgcgctgaaggctgatggcgtcgagtttgactctgtcaaggtcgaaggcatgttgttc
gacatcgaagccggcatcgttcgcagccagattctggctggtgagcctcgcattgatggc
cgcgatacacgtactgtgcgccccatcgaaatccgtagcagcgtgctgccccgcgcccac
ggctcttcgctgtttactcgtggcgaaacccaggcgctggtcgtgaccacactgggcacc
gagcgcgatgcgcagcgcattgacgcgctggctggcgaatacgaagaccgcttcatgatg
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggttcgaccaagcgc
cgtgaaattggccacggccgcttggccaagcgcgcgctgatcgccgtgctgccaacgaag
gaagaattcccctacaccgtgcgtgtggtgtcggaaatcacggaatccaatggttcctcg
tcgatggcctcggtgtgtggcggctgtctgtcgctgatggatgcgggtgtgcccatgaag
gcgcacgtggcgggtatcgccatgggcctgatcaaggatgccaaccgctttgccgtgctg
accgacattttgggtgacgaagatcacctgggcgacatggacttcaaggtcgccggtacc
acgggtggtatcactgctttgcagatggatatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcccaggccaaggaagcgcgcatgcacatcctcggcaagatgcag
gaagccatgggcgaggccaagaccgaagtgtccaacttcgcccccaagctctacacgatg
aagatcaaccccgagaagatccgtgacgtgatcggcaagggcggagcggtcatccgtgcg
ctgacggaagaaaccggttgccagatcaacatcgaagaagacggcacgatcaccattgcg
gccaccgacaacgccaaggccgacgaagccaagcgccgcatcgagcagatcaccgccgaa
gtcgagatcggcaagatctacgaaggcccagtgaccaagatcctggactttggtgccctg
atcaacctgctgcccggcaaggatggcctgctgcacatcagccagatcgcgcatgagcgc
gtggaacgcgtgggcgactacctgaccgaaggccagatcgtcaaggtcaaggtcatggag
actgacgaaaaagggcgcatcaagctgtcgatgaaggtgttgtctgaccgccctgcaggc
ggtagcgaccgtcccgcgcctgcagagcgtggtgaccgcgaaccacgccgcgaccaaggc
cgggagggtggtcgtccacaacaacccgctgaccagcagcaacagcagcaaggacagccc
tcggacggcgaatccggccaagtgattggttaa
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