Acidovorax radicis: KI609_10085
Help
Entry
KI609_10085 CDS
T08078
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
arad
Acidovorax radicis
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arad03009
]
KI609_10085 (rlmD)
Enzymes [BR:
arad01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KI609_10085 (rlmD)
Ribosome biogenesis [BR:
arad03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KI609_10085 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
Methyltransf_11
TPMT
MTS
Motif
Other DBs
NCBI-ProteinID:
UCV01040
LinkDB
All DBs
Position
2218848..2220308
Genome browser
AA seq
486 aa
AA seq
DB search
MSEPKELSPSFEPGVQDASDFPEGWLQVQSMNLDAQGVARKPDGKVIFIEGALPFELVTA
NTHRKKNNWEQASLTAIHRESSQRVRPGCPHFGLHAGACGGCKMQHLHIGAQVAVKQRVL
EDNLWHLGKVKAQTMLRPIEGPAWGYRYRARLSVRHVIKKGEVLIGFHERKSRYVADMQQ
CPVLPPHVDAMLMPLRALIAGMDARDTCPQIELACGDTVTALVLRHLEPLSADDIARLRA
FAAEHQVQWWLQPKGPDTVKLLDEGGELLSYALPDFGITMPFKPTDFTQVNPHINRVLVS
RALRLLDVQPHERVIDWFCGLGNFTLPLATQAREVLGIEGSETLVARSRENYALNQAVAP
DHKALAATDFVARNLFEMTPEMLVADGSADKWLVDPPREGAFALAKALADIEQARIGAEG
AGPLPEGAEGWTPPKRIVYVSCNPATLARDAGLLVHLAGYRCTAAGMVNMFPHTAHVESM
AVFERE
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaccgaaagaactatccccctcgtttgaacccggcgtacaggacgcatccgat
ttccctgagggctggctgcaagtccagtccatgaaccttgacgcccagggcgtggcccgc
aagcccgacggcaaggtcatcttcatcgaaggtgcactcccttttgagctggtcaccgcc
aacacccaccgcaagaaaaacaactgggagcaggccagcctgacggcgatccatcgcgaa
tcgtcacagcgcgtgcgtcccggctgcccacatttcggcctgcatgccggtgcctgcggc
ggctgcaaaatgcagcatctgcatattggtgcccaggtggccgtcaagcagcgcgtgctg
gaagacaacctctggcacctgggtaaggtcaaggcgcagaccatgctgcggcccatcgaa
ggccccgcctggggctaccgctaccgagcccgcctgtcggtgcgccacgtgatcaagaag
ggcgaggtgctgatcggctttcatgagcgcaagagccgctatgtggccgacatgcagcaa
tgccctgtgctcccgccccatgtcgacgccatgctgatgccgctgcgcgcactgatcgcc
ggcatggatgcccgcgacacctgcccccagatcgaactggcctgtggcgacacggtgacc
gcgttggtgctgcgccacctcgagccgctgagcgctgacgacattgcccggctgcgtgcc
ttcgcggctgagcaccaggtgcagtggtggctgcagcccaagggcccagacacggtgaag
ctgctggacgaaggtggcgagctgctgtcgtatgcgctgccggactttggtatcaccatg
ccgttcaagcccaccgacttcacgcaggtgaacccgcacatcaaccgtgtgctggtgtcg
cgcgcgctgcgcctgctggacgtgcagccacacgagcgtgtgatcgactggttttgtggc
ctgggcaacttcacactgccgctggccacgcaggcgcgcgaagtgttgggtattgaaggc
agcgaaacgctggtggcccgctcgcgcgagaactatgcattgaatcaggccgtagcgccc
gaccataaagcgctggcagctactgattttgtagcgcgcaatctgttcgagatgactccc
gagatgctggtggccgacgggtccgccgacaagtggctggtggacccaccccgcgaaggt
gccttcgcgctggccaaggcgctggccgacatcgagcaggcacgcatcggtgccgaaggc
gccgggccattgcctgaaggggccgagggctggacgcccccaaagcgcattgtctacgtg
agttgcaaccccgccacgctggcgcgcgatgcagggctgctggtgcatctggcgggctac
cggtgcacggcggctggcatggtgaacatgttcccgcacacggcccacgtcgagagcatg
gccgtgtttgagcgggagtga
DBGET
integrated database retrieval system
