Acidovorax radicis: KI609_11360
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Entry
KI609_11360 CDS
T08078
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
arad
Acidovorax radicis
Pathway
arad03030
DNA replication
arad03430
Mismatch repair
arad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI609_11360 (dnaE)
03430 Mismatch repair
KI609_11360 (dnaE)
03440 Homologous recombination
KI609_11360 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arad03032
]
KI609_11360 (dnaE)
03400 DNA repair and recombination proteins [BR:
arad03400
]
KI609_11360 (dnaE)
Enzymes [BR:
arad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KI609_11360 (dnaE)
DNA replication proteins [BR:
arad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KI609_11360 (dnaE)
DNA repair and recombination proteins [BR:
arad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KI609_11360 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UCV01257
LinkDB
All DBs
Position
2484801..2488334
Genome browser
AA seq
1177 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDKVAKAAAQDGQPALAITDLNNLFGAIKFYKEARGKGVKP
ILGAEIFLEAEGGGAPSRVIVLVQSRQGYLNLSELLARAWTRNVVKNLALCTWAWLEELS
EGLIALAGAQAGPVGQALLKGDESGAADIALRLAGIFPHRFYIELQRAGRVDDESHVLAA
AQLAARLNLPVVATHPVQFAAADDYEAHEARICIAEGEILANPRRVRKFTRDQYFKSSAE
MQALFADLPSAIANTVEIAQRCNLTLVLGKPQLPDFPTPNGMPIEEYFRIASFEGLEARL
ELLYPNTTERDRQRARYEERLKFEIGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGRGS
GAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKYGK
NAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLQYPPDPKKEGD
KNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLY
QQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIAKRHKGQENFTFETIPL
DDGPTYRLFSEGKTEAVFQFESRGMQGMLKEAKPSRLEDLIALNALYRPGPMDLIPSFVN
RKHGKEVVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKAE
EMAEHREIFRKGAAEKNISQEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHY
TAEFFCANMTVEMDDTDKLKVLFEDAHKMGLTFEPPDVNRGRYRFEPVTDKIIRYGLGAV
KGTGQQAIEAIVAAREGRGDGPQGSTTGPFKSLFEFCLRVDKARMNKRSVEALIKAGAFD
SIHLNRAALVASIDRAFDFAAATLANVNQGGLFDMMGDDAHGSSTQEPDLVDAVPWGVKE
RLTLEKTAVGFYLSGHLFDEVASEVRRFVRTQIDELLDSRDSQILAGIISDFRVINGQRG
KLALFKLDDKSAVIEASADEALLNTYRNELKEDEFVVMMGRLQLDHFSGGLRVKVQQVWD
LAGARCRFGKYLHVLVGDKAPDVPRLVRDFPARREEVPEGELVHGLRVRMGVRCAAEDAA
AVAELQLGESARFYPTDAALAAWTAQAGSGSATVVYE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcatttgcgcctgcacaccgagttttccgtcgttgacggaaccaatcgaatt
gataaggtggccaaggccgctgcccaggacggacagcctgcgcttgccatcacggatctc
aacaacctctttggtgcgatcaagttttacaaggaagcccggggcaaaggagtcaagccc
atccttggcgcggagatttttctggaggccgagggcggcggtgctccgtcgcgcgtcatc
gttctggtgcaaagtcgccagggctatctcaatttgtccgagttgttggcccgcgcctgg
acgcgcaacgtcgtcaagaacctggccctatgcacctgggcctggctggaggagctttcc
gaagggttgattgccctggcgggagctcaggcgggcccggtgggtcaggcgctgctcaaa
ggcgacgaatccggtgccgcggatatcgcattgcggctggcggggatttttccgcaccgg
ttttatattgagctgcagcgtgcgggccgtgtggatgatgaaagccatgtgctcgccgcc
gctcagttggcggcacggctgaacctgccagtggttgccacgcacccggtgcagtttgct
gcagcggatgactatgaggcgcatgaagcccgcatctgtatcgccgaaggtgagatcctt
gcgaacccccgccgggtgcgcaagttcacccgggaccagtatttcaagtcgtcggcagaa
atgcaggcgctgttcgcggacctgccatcggccatcgccaacacggtggaaatcgcgcag
cgatgcaaccttactctggtgcttggcaaaccgcagttgccagactttcctacccccaac
gggatgccgatcgaagaatactttcgcattgcgtctttcgaagggcttgaagcgaggctg
gagttgctgtaccccaacaccacagagcgcgaccggcagcgcgcgcgctatgaggagcgc
ctgaaattcgagattgggaccattttgaaaatgggcttcccaggatactttctgatcgtg
ggcgacttcatccagtgggccaagaacaatggctgccccgtcgggcctgggcgaggctcc
ggtgcgggctcgctggtggcctatgcgctcaagatcaccgatctggacccgctggaatac
aacctgctgtttgagcggtttctgaaccccgagcgggtgtccatgcccgactttgacatc
gatttttgccagtccaaccgtgaccgtgtcatcgactacgtcaaggacaagtacggcaaa
aatgcggtgagccagattgcaaccttcggcaccatggctgcgaaggcggcgatccgcgac
gtgggccgcgtcatggacatgagctacaccttctgcgacggcatttccaagctggttccc
ggcaagccggggatgtcttacaccctgcagtacccgccagacccgaaaaaagaaggggac
aagaacaactacgcgctggaactggagcccctgctctacgagcgagtgcgcaaggaggaa
gacgtcaaaacggtcatcgagatggcccagaagctcgaaggcatgacgcgcaatatcggc
atgcacgcggggggggtgctcatcgcgccaggcaagctgacggatttttgtccgctctac
caacagccgggcagcgagtctgcagtgagccagtacgacaaggacgacgtagaggccatt
ggcctggtgaagtttgactttttgggtcttgccacgctcaccattctggagattgcgcgc
gagttcattgccaaacgccacaaggggcaagaaaacttcaccttcgaaaccattccgctg
gacgacggtccgacttaccggctgttctccgagggtaaaaccgaagccgtgttccagttt
gaaagccgtggcatgcagggcatgctcaaagaggccaagccgagccgactggaagacctg
attgcgctgaacgcgctgtaccgcccggggcccatggacctgatccccagcttcgtgaac
cgtaagcacggcaaggaagtggtggagtacccgcaccccctggtggaacccgtgctgtca
gagacctacgggatcatggtgtaccaggagcaggtgatgcagactgcccaggtcctggga
ggctacagcctgggtggtgccgacatgctgcgccgtgccatgggcaaaaagaaggccgag
gagatggccgagcaccgggagatcttccgcaagggcgcagcagaaaagaacatcagccag
gaaaaggctgacgaagtgttcgacttgatggagaaattcgcgggctacggcttcaacaag
tcgcatgcggctgcctactcgctcttggcgtaccacaccggctggctgaaggtgcattac
acggcggagttcttctgcgccaacatgaccgtggaaatggacgacaccgacaagctcaag
gtgctgttcgaagatgcccacaagatggggctcacgtttgaaccgccggatgtcaatcgt
ggccgctaccggttcgagccggtgaccgacaagatcattcgctatggcctgggcgccgtg
aaaggcacaggccagcaggccatcgaggcgatcgtggctgcgcgcgaagggcggggcgac
gggccgcagggctccaccaccggccccttcaagagcttgtttgagttttgtctgcgtgtg
gacaaggcgcgcatgaacaaacgttcggtggaagcattgatcaaggccggtgcctttgat
tcgatccacctcaaccgtgcggccctcgtggcctccattgaccgggcatttgactttgcg
gcagcgacgctggccaatgtcaatcaaggggggctgtttgacatgatgggcgacgacgcc
catggctccagcacccaggagcctgatttggtcgacgccgtgccctggggcgtcaaggag
cgactcacgctggagaagacggcggtgggtttttacctgtccggccacctgttcgatgaa
gtggcctcggaagtgcgtcgctttgtgcgcacccagatcgacgagctgctggacagccgc
gattcgcagattctggcgggcatcatcagcgacttccgtgtcattaacggccagcgcggc
aagctggccctgttcaagctggatgacaagtctgcggtcatcgaagcttccgctgatgag
gccttgctcaatacctatcgcaacgaactgaaagaggatgagttcgtggtgatgatgggc
cggctgcaactggaccatttcagcggcggcctgcgggtgaaggtgcagcaggtgtgggat
ctggcgggcgcacggtgccggtttgggaaatacctgcatgtgcttgtgggggacaaagct
cccgatgttccgcggctggtgcgcgattttcctgcgcggcgcgaagaggtccccgagggc
gagttggtgcatggcctgcgcgtgcgcatgggcgtgcggtgcgctgcggaagatgctgct
gcggtggctgagctgcaactgggagaaagcgctcgtttttatccgacagacgcagcgctg
gccgcgtggacggcacaggcaggctccggttctgcgaccgtggtgtacgagtag
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