Acidovorax radicis: KI609_19650
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Entry
KI609_19650 CDS
T08078
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
arad
Acidovorax radicis
Pathway
arad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KI609_19650 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arad03400
]
KI609_19650 (uvrA)
DNA repair and recombination proteins [BR:
arad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI609_19650 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KI609_19650 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
nSTAND1
AAA_16
AAA_21
RsgA_GTPase
AAA_22
AAA_23
AAA_25
AAA_18
Viral_helicase1
DnaJ_CXXCXGXG
NACHT
nSTAND3
UvrA_DNA-bind
DUF4350
AAA_33
Anti-TRAP
RNA12
Motif
Other DBs
NCBI-ProteinID:
UCU98677
LinkDB
All DBs
Position
complement(4309627..4315590)
Genome browser
AA seq
1987 aa
AA seq
DB search
MTQGLIRIRGARQHNLKNLDLDIRTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAGQL
FDKQTAQPVRHDTPETIYTELQRRSTEAGDPRIVLTFPVELPGGTSAEQVEQWLSASGFT
KVQAEREVATPTGPRKVLDVVADRFRLGNAEKARVIEAIEVALKRGTGRLNVYVIPQPVQ
PEPVEGRDSVSTSSTRTEAGALTPELWRFSTGLHCPDSDLRYSDPIPSAFSFNSAVGACD
SCRGFGRVIGVDYGLVIPNDKLTLRAGAIKTIQTPAWKEAQDDLMRHAETAGIPRDTPWY
KLTDDQKKWVIGGAPGYKDGQWSKQWYGIKRFFEYLESKAYKMHIRVLLSKYRSYTPCPT
CAGARLKTESLLWRIGRKEDDDAVLEPGKRFMPEGVLWSRKQLEALPGLCLHDLMLLPID
RLRQFFARMQLPVGDDAKGGDAQALKLLHEEITTRLKYLCDVGIGYLTLDRQSRTLSGGE
VQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMHRITEAMLRLRDAGNTLVVVEHDPAVM
LAADRMIDMGPGPGRLGGQIVFDGTTADLRNADTLTGAYLGGRKHVGFGFKRMVTEATPR
LILEGAREHNLQNVSVEFPLQRLVTVTGVSGSGKSSLIQDVLAPALLRHFGKATDTPGAH
DRMLGADHLSDVVFVDQSPIGKTARSNPVSYVGAWDSIRELFAVAPLSKQRSYTAAKFSF
NSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEITIERGTEGPSGSRRS
LNVADVLALTVAEAADFFANDRDVIRALQPIVDVGLEYVALGQPVPTLSGGEAQRLKLAG
FLAEAARSASKSRQTVARKGTLFLFDEPTTGLHFDDIAKLMRALRKLIDAGHSLIVIEHN
LDVIRASDWLIDLGPEGGYAGGLIVAEGTPEDVRQHATSHTGLALREYELTLGVGGHSVH
EKAAVLRKSERLALMDKAPEAKNAIQIVNAKEHNLKNLSVDIPRGKFNVVTGVSGSGKST
LAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVG
TTTEVWHFLRLLYVKLGTQHCTKDGAAVQPQTPESIAAQLLTHFRGQHIGLLAPLVMNRK
GVYTELADWARPRGYTHLRVDGNFLPTTNFPRIDRFKEHTIELPVASLDVSPENEAQLRK
ALADALTHGKGVVHVLSSIGTLAAAMENGAPTAGIGHLHAFSTKRACPVCATSYAELDPR
LFSYNSKHGWCPDCVGTGVKLTKDQRKVFDDSVQDDKEKGREQTFAEPEVEDLADTACPS
CSGTRLNATARAVRFAGVGITDIAALSVTDVRRWIETLRIEGGMTQREGDIARDLVPEIQ
SRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDN
QILLNALHKLGDKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAQGSVADITGAP
DSQTGRYLLHAMKHPLQLRRSMAASEVSAEATAAFARAEAAAPTGRQSAAVKKRAAQAAS
LAADALTEAKERAAMRWLTVHGAQLHNLQNVTATVPLHRLVAVTGVSGSGKSTLARDVLL
ANVQAWVQQRSTKAGRDAMDAGKAPPLVGCTGLSGFESIDRVLEVDQTPIGKTPRSCPAT
YIGFWDTIRKLFAETLEAKARGYAAGRFSFNTGEGRCPSCEGAGVRTIEMSFLPDVKVPC
ETCHGARFNPETLAVTWRGKSIGDVLQMEVDEAVGFFATMPSIAHPLQLLKDVGLGYLTL
GQPSPTLSGGEAQRIKLVTELTKVRDEVGRRGQKAPHTLYVLDEPTVGLHMADVDKLIRV
LHRLVDGGHSVIVIEHDLDVIAEADWILDLGPEGGNAGGRIVAAATPEDVVAAGTHTGKA
LAHVLAR
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atgacccagggactgatccgtatccgcggcgcacgccagcacaacctcaagaacctggat
ctggacatccgcaccggcgaactcacggtggtcacgggccccagcggctcgggcaaatcc
agcctggtgttcgacacgctctatgccgagggccagcgtcgttacgtggaaaccttcagc
gcctatgcgcgccagttcctcgaccgcatggacaagcccgccgtcgacaaggtcgagggc
gtgcccccggccattgccatcgaccagaccaatcccgtgcgctccagccgctccacggtg
ggcacaatgacggagttgaacgaccacctgaagttgttgttcgcccgtgcaggtcagttg
tttgacaagcagacggcgcagcccgtgcggcacgacacgcccgagaccatctatacagaa
ctgcagcgacgcagcaccgaagccggagacccgcgcatcgtgctgacttttccggtggaa
ctgcccggtggcaccagcgcggagcaggttgagcaatggctgtcggccagcggcttcacc
aaggtgcaggccgagcgcgaggtggccacgcccaccggcccgcgcaaggtgctggatgtg
gtggctgaccggtttcgactgggcaatgccgagaaggcgcgggtgatcgaggcgattgag
gtggcactcaagcgcggcacaggtcgcttgaatgtctatgtcatcccccaacccgttcag
cctgagcctgtcgaaggccgggacagtgtttcgactagctcaacccgaacggaggcagga
gcactaacgccggaactctggcgcttctccaccggcctgcactgccccgacagcgacctg
cgctacagcgatcccattccctccgccttctcgttcaactccgccgtgggcgcgtgcgac
agctgccggggttttggccgcgtgatcggggtggactatggcctggtcatccccaacgac
aagctcacgctgcgcgcgggtgccatcaagaccatccagacccctgcctggaaagaggcg
caggacgacctcatgcgccacgccgagacggccggcatcccgcgcgacacgccctggtac
aagctcaccgacgaccagaagaaatgggtcatcggtggcgcgcccggctacaaggacggg
cagtggagcaagcagtggtatggcatcaagcgcttctttgagtacctggaaagcaaggcc
tacaagatgcacatccgcgtgctcttgtccaagtaccgcagctacacgccatgccccacc
tgcgcgggtgcgcggctcaaaaccgaaagcctgctctggcgcatcggccgcaaggaagat
gacgatgcggtgctggagcccggcaagcgcttcatgcccgagggcgttttgtggtcgcgc
aaacagctagaagcgctgcctggcctgtgcctgcacgacctgatgctgctgcccatcgac
cgcctgcgccagttctttgcgcgcatgcaattgccggtgggtgacgatgccaagggcggt
gacgcacaggcactgaagctgctgcatgaagagatcaccacgcgcctcaagtacctgtgc
gatgtgggtattggttacctcacgctcgaccgccaaagccgcacgctcagtggcggcgag
gtgcagcgcatcaacctcacaacggcgctaggcacctcgctcgtcaacacgctgtttgtt
ctcgacgagcccagcatcggcctgcacccgcgcgacatgcaccgcatcaccgaggccatg
ctgcgcctgcgcgatgcgggcaacaccctggtggtggtggagcacgaccccgccgtgatg
ctggcggccgaccgcatgatcgacatgggccccggcccgggccgcctgggcgggcagatc
gtgttcgacggcaccacggccgatttgcgcaacgcagacacgctcaccggcgcctacctg
ggtgggcgcaaacatgtgggctttggcttcaagcgcatggtgaccgaagccacccctcgc
ctcatcctcgaaggcgcgcgcgagcacaacctgcagaacgtgtcggtcgagttcccgctg
cagcgcctcgtcaccgtgaccggcgtgagcggctccggcaagtccagcctgatccaggac
gtgctggcccccgcactgctgcgccactttggcaaggccaccgacacgcccggcgcgcac
gaccgcatgctgggcgccgaccatctgtcggatgtcgtgtttgtcgatcaatcccccatc
ggaaaaaccgctcgatccaaccccgtgagctacgtgggcgcgtgggacagcatccgcgaa
ctgtttgccgtggcgccgctgtccaagcagcgcagctacaccgccgccaagttcagcttc
aacagcggcgacgggcgctgccccacctgcgggggctcgggctttgagcatgtggagatg
cagtttctgagcgacgtgtacctgcgctgccccgattgcgacggcaagcgctaccgtccc
gagattctggagatcaccatcgagcggggtaccgaagggccctccggtagccgccgcagc
ctcaacgtggcggacgtgctcgccctcacggtggccgaggcggcggacttttttgccaat
gaccgcgatgtgatccgtgcgctgcagcccattgtggatgtggggctcgaatatgtggcg
ctgggccagcccgtgcccacgctgtccggcggcgaggcgcagcgcctcaaactcgcgggc
ttcctggccgaggccgcacgcagcgcatccaaatcacgccagaccgtggcgcgcaagggc
acgctgttcctgttcgacgagcccaccaccggcctgcactttgacgacatcgccaagctc
atgcgcgcgctgcgcaagctcatcgacgcggggcactcactcatcgtcatcgaacacaac
ctggacgtgatccgcgcgagcgactggctcatcgacctcggccccgagggcggttatgcc
ggtgggctcatcgtggccgaaggcacacccgaggacgtgcgccaacacgccacctcgcac
accggcctggcgctgcgcgagtacgagttgacgctgggcgtgggcggacactcggtgcac
gagaaagcggcggtgctacgaaaatcagagcggctggcgcttatggataaagcgccagag
gccaaaaatgccatacaaatcgtcaacgccaaggagcacaacctcaagaacctgagcgtg
gacatcccacgcggcaagttcaacgtggtgacgggcgtgagcggctcgggcaagtccacg
ctcgcgttcgacatcctgttcaacgaaggtcagcggcgttacctcgaatcgctcaacgcc
tacgcccgcagcatcgtgcagcccgcagggcggcccgaggtggatgccgtgtacggcatt
ccgcccaccgtcgccatcgagcagcgcctgtcgcgcggcgggcgcaagtccaccgtgggc
acgaccactgaggtgtggcacttcctgcgcctgctgtacgtcaagctcggcacgcagcac
tgcaccaaagacggcgccgccgtgcagccgcaaacccccgagagcatcgcggcccagctg
ctcacgcatttccgcgggcagcacatcggcctgctcgcgccgctggtgatgaaccgcaaa
ggtgtgtacaccgagctggccgactgggcgcgcccgcgtggctacacccacctgcgcgtg
gatggcaattttttgccaaccaccaactttccgcgcatcgatcgcttcaaggagcacacc
attgagctgcctgttgccagccttgatgtgtcgcccgagaacgaagcccagctccgcaag
gcactggccgacgcgctcacccacggcaagggcgtggtgcatgtgctcagcagcattggc
acgctggccgccgccatggaaaacggtgcgcccacagcgggcatcggccatttgcatgcg
ttctctaccaagcgcgcctgccccgtgtgcgccaccagctatgccgagctggacccgcgc
ctcttttcctacaacagcaaacacggttggtgccccgactgcgtgggcacgggcgtcaag
ctcaccaaggaccagcgcaaggtgtttgacgactcggtgcaagacgacaaggaaaaaggc
cgcgagcagacctttgccgagcccgaggtggaagacctggccgacaccgcctgccccagc
tgcagcggtacacgcctgaacgccacggcaagggcggttcgatttgcaggtgtaggaatt
accgacatcgccgcgctgtcggtgacggatgtgcgccgctggatcgaaaccctgcgcatc
gaagggggcatgacccagcgcgagggcgacattgcccgcgacctggtgcccgagatccag
agccggcttgaattcctcgaagaggtcggcctgggctacctcacgctggaccggggcgcg
cccacgctgagcggtggcgaggcgcagcgcattcgcctggctgcgcagctgggcagcaac
ctgcagggcgtgtgctacgtgctcgacgagcccaccatcggcctgcacgcgcgcgacaac
cagattttgctcaacgccctgcacaagctgggcgacaagggcaacacgctggtggtggtg
gagcacgacgaagacaccatccgtcgcgccgaccacatcatcgacattggcccgagcgcc
ggcaaacgcggcgggcgcctggtggcgcagggcagcgtggccgacatcacgggcgccccc
gattcgcaaaccggccgctacctgctgcacgccatgaagcacccgctgcagctgcgccgc
agcatggcggccagcgaggtgagcgccgaagccaccgccgcctttgcccgggccgaagcc
gcagcgcccaccggccggcaaagcgccgccgtcaagaagcgagcagcccaggctgcatcg
ctggcggcggatgcgttgaccgaagccaaggaacgcgccgccatgcgctggctgaccgtg
catggcgcgcagttgcacaacctgcagaacgtgacggccaccgtgccgctgcaccgcctg
gtggcggtgacgggcgtgagtggctcgggcaagtccaccctggcgcgtgatgtgttgctg
gccaacgtgcaggcctgggtgcaacagcgcagtaccaaggccgggcgcgatgccatggat
gcaggcaaggcgccgccgctggtgggttgcacagggctgtcgggcttcgagagcatcgac
cgcgtgctcgaagtggaccagacgccgattggcaaaacgccgcgcagctgccccgccacc
tacatcggcttttgggacaccatccgcaagctgtttgccgaaacgctggaggccaaggcg
cgtggctatgccgccgggcgattcagcttcaacaccggcgaaggccgctgccccagctgc
gaaggcgcgggcgtgcgcaccatcgagatgagcttcttgcccgatgtgaaggtgccctgc
gagacctgccacggcgcgcgcttcaaccccgaaacgctggccgtgacctggcgcggcaaa
agcattggcgacgtgctgcagatggaggtggacgaggccgtgggcttcttcgccaccatg
cccagcattgcgcacccgctgcaactgctcaaggacgtggggctgggctacctcacgctg
ggccagccctcgcccacgctgagcggtggcgaggcgcagcgcatcaagctcgtcaccgag
ctgaccaaggtgcgtgacgaagtgggccgccggggccagaaagcgccgcacacgctgtat
gtgctggacgagcccaccgtgggtctgcacatggccgacgtggacaagctcatccgcgtg
ctgcaccgcctggtcgatggcggccacagcgtgatcgtgatcgagcacgacctggatgtg
atcgccgaggccgactggatcctggacctggggccggagggcggcaacgcaggggggcgg
atcgtggccgctgcgacgcccgaggatgtggtggcggcgggcacgcacacgggcaaggcg
ctggcgcacgtgttggcgcgctga
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