Agrobacterium radiobacter: ACN9MK_05035
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Entry
ACN9MK_05035 CDS
T11332
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
arai Agrobacterium radiobacter
Pathway
arai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACN9MK_05035 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arai03019
]
ACN9MK_05035 (rnr)
03016 Transfer RNA biogenesis [BR:
arai03016
]
ACN9MK_05035 (rnr)
Enzymes [BR:
arai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACN9MK_05035 (rnr)
Messenger RNA biogenesis [BR:
arai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACN9MK_05035 (rnr)
Transfer RNA biogenesis [BR:
arai03016
]
Prokaryotic type
tRNA degradation factors
ACN9MK_05035 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
XRS30046
LinkDB
All DBs
Position
1:complement(986126..988480)
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AA seq
784 aa
AA seq
DB search
MSKAPRQRQGSASDGFGRTGRGKRVNEGEGIIHGEVPSREVLLKFIADHPQQASKREIAK
AFGLKGENRVVLKALLKELETDGMVQKSRKSLTRPGGLPPVTVLDITTRDKDGELIGRPA
EWPEDQGAAPAVLIRQSSQDRGKKAPAAGLGDRILAKIFPSKESAGPAYTARVVKLIDRR
QNALLGVFKETAGGGGRLMPIDRRGEEMVIDPDGVGDAKDGDLIEVETSRNSGRYGLTRA
KVLSVIGSVASEKAISMIAIHSHGIPHIFPSNVLAEADAAKAASMSHREDWRDLPLITID
PADAKDHDDAVYAEPDTSPDNPDGVIVTVAIADVSWYVRPGSPLDREALKRGNSVYFPDR
VVPMLPERISNDLCSLKEGVDRPALAVRMTFSKEGRKAGHTFHRIMMKSAAKLSYQQAQA
AIDGRPDDKTGTLLEPILKPLWHAYEVMKRGRDRRQPLELDMPERKILLRPDGTVDKVVI
PERLDAHKLIEEMMIQANVAAAETLEKKKQPLVYRIHDAPTLSKQEVLREFLGTIGITMA
KGAAMRANSFNGILARALDTPHQIMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSP
IRRYADLIVHRALVGSLGLGEGGITPQEEATLDDIAAEISTFERRAMAAERDTINRLIAH
HLSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFLYDEAHQALTGEKTG
LGYQLGDAVQVRLAEAVPLAGALRFDMLSPGRKMPVGSRSFHKAGRRTSRLAAKPGTRPP
RRRR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaggcgccgcgtcagagacagggttccgccagcgacggtttcggacgcaccggg
cgcggcaagcgtgtgaatgaaggtgaaggcatcatccatggcgaggtgccttcccgcgaa
gtgctgctgaaattcatcgccgaccacccgcagcaggcctccaaacgcgaaatcgccaag
gctttcggcctgaagggtgaaaaccgcgtggtcctgaaggcgctgctgaaggagcttgaa
accgacggcatggtccagaagagccgcaagtctctgacacgcccgggcggcctgccgcct
gtgacggttctcgacatcaccacccgtgacaaggacggcgaactgatcggccggccggcg
gaatggccggaggatcagggcgcggcacccgccgtactcatccgccagtcatcgcaggac
cgcggcaagaaggccccggcagcgggtcttggcgatcgtattctggcgaagatcttcccc
tccaaggaaagcgccggcccggcctatacggcccgtgtcgtgaagctgatcgaccgccgc
cagaacgcgctgctcggcgtattcaaggagacggcaggcggcggcggacggctgatgccg
atcgaccggcgtggcgaggaaatggtcatcgaccccgatggcgtcggcgatgcaaaggat
ggcgatctgatcgaggtggaaacctcgcgcaacagcggtcgttatggcctgacgcgcgcc
aaggttctgtcggtcatcggctctgtcgcctccgaaaaggcgatctcgatgatcgcgatc
cattcccacggcattccgcatatcttcccctcgaacgttcttgccgaggcggatgccgcc
aaggcggccagcatgtcgcaccgcgaggactggcgcgacctgccgctcataaccatcgat
ccggccgacgccaaggaccatgacgatgcggtctatgccgagcccgacacgtctcccgac
aatcctgacggcgtcatcgtcaccgtcgccattgccgatgtctcctggtatgtgcggccc
ggttcgccgctggaccgcgaggcgctgaagcgtggcaactccgtctatttccccgaccgc
gtcgtgccgatgttgccggagcgcatctccaacgatctctgctcgctgaaggaaggcgtt
gaccgccctgcccttgcggtgcggatgaccttttcgaaggaaggccgcaaggcgggccac
accttccaccgcatcatgatgaagagcgcggcgaagctttcctaccaacaggcacaggca
gccattgacggcaggccggacgacaagaccggtacgctgctggaacctatcctgaagccg
ctgtggcatgcctatgaggtgatgaagcgcggccgtgaccgccgccagccgctggaactc
gacatgccggagcgcaagatcctgcttcggcctgatggtacggtggacaaggtcgtcatt
cccgaacgcctcgatgcgcataagctgatcgaagaaatgatgatccaggcgaacgtcgcc
gccgccgagacgctggaaaagaaaaagcagccgctggtctatcgcatccacgatgcgccc
acgctttccaagcaggaggttttgcgcgaattccttggtaccatcggcattaccatggcc
aagggagcggccatgcgcgccaattccttcaatggcattctggctcgcgcactcgacacg
ccgcaccagatcatggtcaacgagatggtgctgcgcagccagagccaggcgatctacagt
cctgagaatatcggtcacttcggcctcaacctgatgaaatacgcgcatttcacctcgccg
atccgccgttatgccgacctgatcgtgcatcgcgcgctggtgggctctctgggactgggt
gaaggcggcatcactccgcaggaagaagcgacgctggacgatatcgccgccgaaatctcc
accttcgagcggcgcgccatggccgccgagcgcgacaccatcaaccgcctcatcgcgcat
catctgtctgaacgggtgggcgaagaattcgagggccgcgtcggcggtgtcaccaaggcg
ggactttttgtcgcgctgccgcaatttggcgctgatggttttgttcctatatctacactc
ggaaccgattatttcctctatgatgaggcccatcaggccttgacaggggaaaagaccggc
ctcggctaccagcttggcgatgcggttcaggtgcggcttgcggaagcggtgcctttggca
ggtgcgctgcgtttcgatatgctgagcccggggcgcaagatgccggtcggctcgcggtcg
ttccacaaggcaggccggcggacatctcgtcttgccgccaagcctggaacacgtccgccg
agaaggcgacgataa
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