Agrobacterium radiobacter: ACN9MK_09955
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Entry
ACN9MK_09955 CDS
T11332
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
arai Agrobacterium radiobacter
Pathway
arai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACN9MK_09955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arai03019
]
ACN9MK_09955
Enzymes [BR:
arai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACN9MK_09955
Messenger RNA biogenesis [BR:
arai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACN9MK_09955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
CMS1
AAA_19
Flavi_DEAD
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XRS28322
LinkDB
All DBs
Position
1:1982751..1984223
Genome browser
AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLSHNYLTDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKTAEGDAGRPAGPRKQRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGNRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagatcgtggccagcgttacccagctt
ggctatacgacccctactcccattcaggcaaaggccattccgctgctgctcgaaggccgc
gacctgatcggcctcgcacagaccggcaccggcaagaccgccgctttcggcctacccatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcaccctcatc
ctcgccccgacgcgcgagctggtgaaccagatcggtgaaaacctgcgctccttcgtgaag
aagacgccgctgcgcatcaaccaggtggtcggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggatattctggtggcgacccccggccgcctgcttgatctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgcttgatgaagcggaccag
atgctcgatctcggcttcatccacgacctccgcaagatttccaagatggtcccggccaag
cgccagacgcttctgttctcggccaccatgccgaaggcgatcgccgatctgtcgcataac
tacctgaccgatccggtcaaggtcgaagtgacgcctccgggcaaggctgccgacaaggtc
gagcagtacgtgcatttcgtggccggcaagaacgacaagaccgatctcctgaagaagtcg
ctcaacgagaaccctgatggccgcgccatcgtgttcctgcgcaccaagcacggcgccgag
aagctctacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgggcactgaagggcttcaaggatggtgagatcaaggtactg
gtcgcaaccgacgtcgctgcccgcggcatcgacattccggccgtaacgcatgtcttcaac
tatgacctgccggaagtgcctgacgcctatgtccaccgcatcggccgtaccgcccgcgcc
ggccgcgacggcatcgccatcgcattttgcgcaccggacgaaacccgtctgctgcatgac
atcgaaaagctgatgaagatcgatattccggtcgcatctggcgaacgtccggccggtctc
gccagcccgacgcgccccaacaacaaccgcggcggccgcaacaacaatggtggccagcag
cgcggcccgcgtgaaggcggacgtcacaatggcgagtcccgcccgtcccgccaccatgca
ccgcgcgatgccgacaacgatctggaagtcacctccgacttcaagcgcgtcaagacggcg
gaaggcgatgcaggccgcccggccggcccgcgcaagcaacgccgcccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaagcgcgct
tccggcaacggcaatcgcggccgcaaccgctaa
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