KEGG   Agrobacterium radiobacter: ACN9MK_14825
Entry
ACN9MK_14825      CDS       T11332                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
arai  Agrobacterium radiobacter
Pathway
arai03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:arai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ACN9MK_14825 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:arai03400]
    ACN9MK_14825 (ligD)
Enzymes [BR:arai01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACN9MK_14825 (ligD)
DNA repair and recombination proteins [BR:arai03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ACN9MK_14825 (ligD)
SSDB
Other DBs
NCBI-ProteinID: XRS30716
LinkDB
Position
2:complement(159738..162230)
AA seq 830 aa
MGLQTYNAKRSFDKTPEPKGTKAEQQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDARKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKTGR
SVEEVAAKPKDTWNSKPVSKKAAVSTSGKKQAHALPKGARKQTMPSFVPPALATLKPKPP
DGDRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGRAVTGAIKALPVETVLIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GDPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKSKCSMRQEFVI
GGYTVSSTSDHAIGSLALGVYENGKLRHVGRVGTGYTGEVAEMLLGRLKPLERKESPFGE
KLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREEKAVSDTK
APQSTIKFTHPDRLYWPDDGVTKEGLADYYAQVWRHIAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINKAVEQIRDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGVTTANWEKP
DMITMDIDPGEDVAWEEVIEAALELKRRFEEAGLAAFVKTSGGKGLHVVAPLKPQAGWAP
VKAFAKAMAADMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAVAAYSTRARPGAAI
SAPLEWSELTAEIGPAHFTVNNIGARLAALKKDPWDGFFAAAKPLPKKAR
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgggattgcagacctataacgccaagcgcagtttcgacaagacgccggagcccaagggt
acgaaggccgaacagcagggatcgagcttcgtgatccagaaacacgatgcccgccgtctg
cattatgattttcggctggaaatggatggcgtgctgaaaagctgggcggtgacgcgcggt
cccagtctcgatcccgaggacaaacgccttgccgtgcatgtggaggaccatcccctcagt
tatggtgattttgaaggtgttatccccaagggacaatatggcggcggcaccgtgattgtc
tgggatcgcggcatctggcagccgatcggtgacgcccggaaaggttatcgcaaaggtcat
ctggaatttgaactggaaggcgaaaagctgaaaggacgctggcatctggtgcgcatgcat
ggaaagccgggcgaaagccgggaaaactggctgctgatcaagggcgacgacgaggaagcc
agacataaaggcggtgcggatattctggaggaacggccggaatcggtgaaaaccgggcgc
agcgtcgaggaagtcgcggccaaaccgaaagatacctggaattccaagccggtatcgaaa
aaggccgccgtttcgacgtcgggcaaaaaacaggcgcatgcgctgcctaaaggcgcgcgc
aaacagactatgccgtcctttgtgccgccggcgctcgcgacgctcaagccgaaaccgccc
gacggagatcgctggctgcatgaaatcaaatttgacggctatcgtctgcaggcgcgcgtc
gatcagggcaagctccagctcctgacccgcagcgggctggactggacggagaaattcggc
agggccgtgacaggagctatcaaggcgctgccggtggaaacggtgttgatcgacggcgaa
atcgtcgtggaacgcgatagcggggcttccgatttctccgccttgcagcaggatctgagc
gaaggacgcagcgaccgtttcgtgttttacgccttcgatcttctttatctcgatggcagc
gatctgcgtggtgcggcattgagcgaacgaaaggcgctgctcgaaaagctgttgccggcg
ggcgatccccatctccgttacagccagcattttgaagaaagcggcgcgcttgtcctcgac
catgcctgtcggctcagtcttgagggtgtcatttccaaggtcaagagcagcaaatatgtt
tccgggcgcaagggagaatgggtgaaatccaaatgctcgatgcgacaggaattcgttatc
ggtggttatactgtctcctcgacatcggaccacgccattggatcgctagcgctcggcgtt
tatgaaaatggcaagctgcgccatgttggacgtgtcgggacaggttatacgggcgaagtg
gcggagatgctacttggccggctgaagccgcttgagcgcaaggaaagcccgttcggtgag
aaactcaccgcgcttgcccgacgtgatcttcatttcgtcaagccggaactagtggcggaa
gtggagtttcgcgcatggtctggagatggcaatctgcgtcatgcctctttccgggggctg
cgcgaagacaagcccgcaggagaaatcgaacgcgaggagaaggccgtgtccgacaccaag
gcgccgcaatcgacgatcaagttcacccatccggaccggctgtactggccggacgatggc
gtgacgaaggaggggcttgccgattattatgcgcaggtctggcggcacatcgcgcccttt
gtcgtcaaccggccgctggcattgctgcgctgcccggaagggattgaggggcaacgcttc
ttccagaaacatgcctggcgcggcatcaacaaggcggttgagcagatcagggatcccaag
gacaagggcggtgagccgctgatccgcatcaccgattttgatggcctgatggcgctcgtg
caatccgccgcgcttgaaatccacccatggggcgtgaccaccgccaattgggaaaagcct
gacatgatcaccatggatatcgaccccggcgaggatgtggcatgggaagaggtgattgag
gcggcgctggaactgaaacggcgtttcgaagaggccgggcttgccgctttcgtcaagacc
tcgggcggcaagggactgcatgtcgtcgcgccgctgaagccgcaggcgggctgggccccg
gtaaaagccttcgccaaggccatggcggcggatatgtcgaaagccgagccggagaaatat
ctttccgtcgccaccaaagcgaaacgtcagggccgtatttttatcgactacctgcgcaac
ggcaggggcaatacggcggttgcggcctattcgacgcgcgcccggccgggagccgccatt
tcagcgccgctcgaatggtcggaactcaccgccgagatcggtccggcccatttcaccgtc
aacaatattggggctcgtcttgcggcgctgaaaaaagacccgtgggacggcttttttgcc
gctgccaagccgctgccgaaaaaggcacggtga

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