Aminithiophilus ramosus: KAR29_05165
Help
Entry
KAR29_05165 CDS
T08824
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aram
Aminithiophilus ramosus
Pathway
aram03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aram00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAR29_05165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aram03019
]
KAR29_05165
Messenger RNA biogenesis [BR:
aram03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KAR29_05165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7684
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QTX33277
UniProt:
A0A9Q7APS7
LinkDB
All DBs
Position
complement(1128911..1130638)
Genome browser
AA seq
575 aa
AA seq
DB search
MGGDALAKSKTRRRRSGKSASGAADLRVIPLGGLGQIGKNCTVFEYGDDLVMVDCGLMFP
EEDMLGIDYVIPDVSYVEERRENLRAIVVTHGHEDHIGALPFVLPRLDVPVYATKLTLGM
IRNKLKEAAPAYEPRFHEIRAGDVVELGAFSFEFIAVCHSIPDGVGYALHTPLGTVVHTG
DFKLDPTPIDGRVTDYGTFAELGRRGVLLLMSDSTNVERSGFTASERLVGRTLEELFRLH
RNRRIVLATFASNLHRAQQVFDVAARFNRKVVLMGRSMINNVALARELGYVSVDESLLIA
PQDVDKIPHNRLVVLTTGSQGEPFSGLVLMSKGEHHHIKLSEKDVVVVSATPIPGNEKLV
SHTVNRLFACGCDVVYERERQIHVSGHAAQEELKMMLSIVRPRYFVPVHGEYRHLVRHNQ
LAQDTGVPARNTFLLLNGDVLQISADKAQIKGNVPFGSILVDGRVMGELEGSVMQERRDL
SEEGILTVSVVLSTDGVLLRPVVTESRGFLHVDMAEELHREVRETVMKLVETAARKGSID
EEDLAQKIRGRVKDLVRRHTRSYPVIMPLISLVEV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgatgccttggctaaatcaaagacaagaaggcgtcgaagcggcaagagcgct
tccggtgccgccgatctgcgcgtcattcctttggggggactggggcagataggcaagaac
tgcacggtattcgagtacggagacgatctggtgatggtcgactgtggactcatgtttccc
gaagaggacatgttgggcatcgattacgtcatccccgacgtgagttatgtcgaagagcgc
agggagaatctccgggccatcgtggtcacccatggccacgaggaccacatcggggccctt
cccttcgtccttccccgtctcgacgtccccgtttatgccacgaaactgactctgggcatg
atccgcaacaagctcaaggaggcggcccccgcctacgagccccgctttcacgagatccgc
gccggcgatgtcgtcgagcttggcgccttcagcttcgagttcatcgccgtctgtcactcc
attcccgacggcgtcggctatgccctccacacgccgctcgggacggtggtccacacggga
gatttcaagctcgatcccacgcccatcgacggccgggtcaccgattacggcaccttcgcc
gagctggggcgaaggggtgtcctgcttctcatgtcggactcgacgaacgtcgagcgttcc
ggctttaccgcctcggagcgcctcgtgggacggaccttggaggaacttttccgccttcac
cgtaacagacgcatcgtcttggccaccttcgccagcaaccttcaccgggcccagcaggtc
ttcgacgtggcggcccgtttcaaccgcaaggtcgttctcatggggcggagcatgatcaac
aacgtcgccctggcacgggagctgggctacgtcagcgtcgacgagagccttttgatcgcc
ccccaggacgtggacaagatcccccacaatcgcctcgtggtcctcacgacggggagtcag
ggagagcccttctcgggcctcgttctcatgagcaagggggagcaccatcacatcaagctc
tccgaaaaggatgtcgtcgtcgtcagcgccacgcctattccgggcaacgagaagctcgtg
agccataccgtcaaccgtctcttcgcctgcggctgcgacgtcgtctacgagagggagagg
cagattcacgtctcgggccatgcggcgcaggaggagctgaagatgatgctctccatcgtc
aggccccgctacttcgtccccgttcacggcgaataccgtcacctggtgcgccacaatcag
ctggcccaggacacgggagtgccggcccggaacacctttctcctcctcaacggcgatgtc
ctccagatcagcgccgataaggcccagatcaaagggaacgtccccttcggcagcatcctc
gtcgacggccgggtcatgggcgagctggaggggagcgtcatgcaggagcgacgcgatctc
tccgaagaggggattctcaccgtctccgtcgtcctctccaccgacggagtgcttctccgt
cccgtcgttaccgagagtcgaggcttcctccatgtcgatatggccgaggagctccatcga
gaggtccgcgagacggtgatgaaactcgtcgagacggctgcccgcaagggttccatcgac
gaggaggatctggcccagaagatcagaggtcgcgtcaaggacctggtccgccgccacacg
cgcagctacccggtaatcatgccgttgatttccctcgtggaggtctag
DBGET
integrated database retrieval system
