Aminithiophilus ramosus: KAR29_09155
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Entry
KAR29_09155 CDS
T08824
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aram
Aminithiophilus ramosus
Pathway
aram03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aram00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KAR29_09155 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aram03021
]
KAR29_09155 (rpoC)
03400 DNA repair and recombination proteins [BR:
aram03400
]
KAR29_09155 (rpoC)
Enzymes [BR:
aram01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KAR29_09155 (rpoC)
Transcription machinery [BR:
aram03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KAR29_09155 (rpoC)
DNA repair and recombination proteins [BR:
aram03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KAR29_09155 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
CPxCG_zf
Motif
Other DBs
NCBI-ProteinID:
QTX31533
UniProt:
A0A9Q7AA62
LinkDB
All DBs
Position
complement(1970719..1975722)
Genome browser
AA seq
1667 aa
AA seq
DB search
MSRREIASVRIKLASPERIQEISSGEVKKPETINYRTLRPEKDGLFCERIFGPTRSFECA
CGKYKRSGPKFKGVVCDRCGVEVTDSRVRREKMGHIKLAAPVVHIWYLRGIPSRLSLLLG
TATKDLEKVVYFAPIRRREAVYKVVIEGRRTDLARRGDLLAACEERIHRHFDPKFKAEEA
LRILSVDDVPLSVGDVVSSQQISRFRTDYGDGVFEVEPAFRIRTESPDGRFAVDQIIAAS
ELDEARGAGLDVDAERALSGNQEGFLVTAVAHLPFAKGDVISVSEYDLYHQKYPGRFTAQ
QETITLEDPCYVVIGGGDSPFEQSDIILEKEQRLCSAYDKTFDAGIGAEGVKALLGCINL
EELVGSLREEIGDTTGQKKRKLVKRLQVAEDFRKSDSKPEWMVLDVLPVIPPDLRPMVQL
DGGRFATSDLNDLYRRVINRNNRLLKLQELRAPEIIVRNEKRMLQESVDALIDNGRMGKA
VLGAGNRPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPNLKIYQCGLPKQMALE
LFKPFVMQKLVERGQAANVKNARRIIERGRDEVWAILEEIIKDHPVLLNRAPTLHRLGIQ
AFEPVLMEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQSEARVLMLSAHNVLSPAS
GRSIVTPSQDIVLGTYYLTQMLDGLKGEGMSFRDIDDALIALDHGVVHVNARVRLRAEPG
WKVDVDGKGWFETSPGRALFNSILHPRMRYYNHKMGKKDLAQLLDSAYDAVGVKKMVEML
DDIKSLGYRWAAKSGISLGLDFIAVPPEKNEIVRATLDKEENLIDEYQMGVLTDDEYFRE
KELLWSEASRNVADAIVANMEETNPVRMMAESGARGSKSQLAQMSGIRGLMADPSGRIID
YPITANFREGLNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDLIITAPDCGT
DRGIVIEPLIQDGKAVIGIAERIAGRTALKDIRNPLTSELIVAKGKEIDPAKARIVEEAG
IDRVEVRSPLTCGLRHGLCQTCYGRDLATRKPVSIGETVGVVAAQSIGEPGTQLTMRTFH
TGGVRITGEDITQGLPRIEQLFEVRKPKKVALLAEASGRIAEIREMEGKRKVILVADGPE
GEQKFSYNVPLNQNLLVEEGREVEKGDALTEGYVDPQQLLEVKGLEAVQKYLVDNIQEVY
RSQGVSINNKHIEVILRKVAPVNRVRVIEEGDSSFVAGELVWMDELDRDVEAIRDNNRHC
LEEATTALAGTILKDAKGQGNVEAALQFKGQDLDRGSIARILMPGTPVNELYVEDGEGLL
RVIVGEASFRRHLEGLELTESIDLSEGKRIEAGISLTLGQLSLVTQEAPRPLWVRDTDVL
KSLTETAFLAEDTVVDGQAIALKDRLITADTARHFRELQVESVKVWKAPERISLADAMQK
YLIDKVWSKPLSRAIDASGNEVRHISHIVDGSVVRGLVEGSLTAVQIEGEIVTRQKILAQ
TMSDTVYGKVILETVRDGQGRVVAEPGQEVNHALLDALVMADPSELVVRPIYGASEMKRL
IQRVGFVRRLREEPQYSAVIHGITKAALNTDSFLSAASFQQTAQVLAKAAVRGDVDPLVG
LKENVIIGHLIPAGTGAEHYRIRPRSAAPDRVGGEPEEAPAANPSGN
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcgcgaaatcgccagcgtccgcatcaagctggccagccccgaacggattcag
gagatctccagcggagaggtcaagaagcccgagacgatcaactaccggacccttcgtccc
gaaaaggacggtctcttctgcgagcgcatcttcggccccacgcggagcttcgagtgcgcc
tgcggcaaatacaagcgcagcggccccaagttcaagggcgttgtctgcgatcgctgcggc
gtcgaagtcaccgacagccgcgtccgccgcgagaagatgggtcacatcaaactggccgcc
cccgtcgtccacatctggtacctccggggcatccccagccggctcagccttctcctcggc
acggcgacgaaggacctggagaaggtcgtctacttcgcccccatccgtcgccgcgaggcc
gtctacaaggtcgtcatcgaggggcgccgcaccgacctggcccgccggggcgacctcctg
gccgcctgcgaggagcgcatccaccgtcacttcgatcccaagttcaaggccgaagaggcc
cttcgcatcctctccgtcgacgacgtccctctctccgtgggcgacgtcgtctcgtcccag
cagatttcgcgattcaggaccgactacggcgacggcgtcttcgaagtcgagccggccttc
aggatacggaccgaatcgcctgacggacgtttcgccgtcgatcagatcatcgccgcctcc
gagctggacgaggcgcggggcgcggggctcgacgtggacgccgagagggctctttcgggc
aaccaggagggcttcctcgtcacggccgtggcccatctgcccttcgccaagggcgacgtc
atctccgtcagcgagtacgatctctaccaccagaagtacccggggcgcttcacggcccag
caggagacgatcaccctcgaggatccctgctacgtcgtcatcggcggcggcgactctccc
ttcgagcagagcgacatcatcctcgagaaggagcagcgcctctgttccgcctacgacaag
accttcgatgccggcatcggcgccgagggcgtcaaggccctcctgggatgcatcaacctg
gaggagctcgtcggcagcctccgcgaggagatcggcgacacgacgggacagaagaagcgc
aagctcgtcaaacgcctccaggtggccgaggacttccgcaagagcgacagcaagcccgag
tggatggtcctcgacgtcctccccgtcatccctcccgacctgcgccccatggtgcagctc
gacggcggccgtttcgccacatcggacctgaacgacctctatcggcgcgtcatcaaccgc
aacaaccgtctcctcaagctccaggagctgagggcgccggagatcatcgtccgcaacgaa
aagaggatgctccaggagtccgtcgacgccctcatcgacaacggccgcatgggcaaggcc
gtcctcggtgccggcaacaggcctctcaagagcctcaccgatttgctgcggggcaagaag
gggcgcttccgccagaaccttctgggcaagcgcgtcgactactcgggccgttccgtcatc
gtcatcggccccaacctgaagatctaccagtgcggccttcccaaacagatggccctggag
ctcttcaagcccttcgtcatgcagaagctcgtcgagcgcggccaggccgccaacgtcaag
aacgcccggcgcatcatcgagcgcggtcgcgacgaggtctgggccatcctggaggagatc
atcaaagaccatcccgtcctcctcaaccgggctccgaccctgcaccgcctcggcattcag
gccttcgaacccgtcctcatggagggcaaggccatccgccttcatcctctcgtctgcacg
gccttcaacgccgatttcgacggagaccagatggccgtccacgtccccctctccctggag
gcccagtccgaggcccgggtgctcatgctctcggcccacaacgtcctctccccggccagc
ggacgctccatcgtcacgcccagtcaggacatcgtcctcggaacctactacctgacgcag
atgctcgacggcctcaagggggagggcatgagcttccgcgacatcgacgacgccctcatc
gccctcgatcacggcgtcgtccacgtcaacgcccgcgtccgcctcagggccgagccggga
tggaaggtcgacgtcgacgggaaaggctggttcgagacctcgcccggtcgggccctcttc
aacagcatccttcacccccggatgcgctactacaaccacaagatgggcaagaaggatctg
gcccagctcctcgacagcgcctacgacgccgtcggggtcaaaaagatggtcgagatgctc
gacgacatcaagtcgctgggctatcgctgggccgccaagagcggcatcagcctcgggctg
gacttcatcgccgtcccgcccgagaagaacgaaatcgtcagggcgaccctcgacaaggag
gagaacctcatcgacgaataccagatgggcgttctcaccgacgacgagtacttccgcgag
aaggagctcctctggtccgaggcctccagaaacgtcgccgacgccatcgtggccaacatg
gaggagaccaaccccgtgcgcatgatggccgaatcgggcgcccgcggaagcaagagccag
ctcgcccagatgtcgggcatccgggggctcatggccgatccgtcggggcgcatcatcgac
tatcccatcacggccaacttccgtgaggggctcaacatgctcgaatacttcatctccacc
cacggcgcccggaagggacttgccgacacggccctccggacggccaagtcgggctatctg
acgcgccgtctcgtcgacgtcgcccaggacctgatcatcaccgctcccgactgcggcacc
gacagaggcatcgtcatcgaacctctcatccaggacggcaaggccgtcatcggcatcgcc
gagcgcatcgccggccgcacggccctgaaggacatccgcaatcccctcacgtcggagctc
atcgtcgccaagggcaaagagatcgatcccgccaaggccaggatcgtcgaagaggccggc
atcgaccgcgtcgaggtgcgcagtcctctcacctgcggccttcgccacggtctctgccag
acctgctacggccgcgacctggccacgcgcaagcccgtctccatcggcgagaccgtcggc
gtcgtcgccgcccagtccatcggcgagccgggaacgcagctcaccatgcgcaccttccac
acggggggcgtccgcatcaccggcgaggacatcacccaaggtctgccgaggatcgagcag
ctcttcgaagtccgcaagcccaagaaagtggccctcctcgccgaggcttcgggtcggatc
gccgaaattcgcgagatggagggcaaacgcaaggtcatcctcgtcgccgacggtcccgag
ggggagcagaagttcagctacaacgttcccctcaaccagaacctcctcgtcgaggaggga
agagaagtcgagaaaggcgacgccctcaccgagggctacgtcgatccccagcagcttctg
gaggtcaaggggctcgaggccgttcagaaatacctcgtcgacaacatccaggaggtctac
cgctctcagggcgtctccatcaacaacaagcacatcgaagtcatcctgcgcaaagtggcg
cccgtcaaccgggtccgcgtcatcgaagagggcgacagctccttcgtcgccggcgagctg
gtctggatggacgagctcgaccgggacgtcgaggccatccgcgacaacaaccgtcactgc
ctcgaagaggccacgacggcccttgccggcacgatcctcaaggacgccaaggggcagggg
aacgtcgaggcggcccttcagttcaagggacaggatctggacaggggttccatcgcgaga
atcctcatgcccggcactcccgtcaacgagctttacgtcgaggacggcgagggactcctg
cgcgtcatcgtcggcgaggcctccttccgacgccacctcgaagggctcgagctgaccgaa
tcgatcgacctgagcgagggcaagcggatcgaggccggaatttccctgacgctggggcag
ctctctctcgtcacccaggaggcgccccgtcccctctgggtccgcgataccgacgtcctc
aagagcctgacggaaacggccttcctcgccgaggacaccgtcgtcgacggccaggccatc
gcgctcaaggaccgcctgataacggccgacacggcccgccacttcagggaactgcaggtc
gagtcggtcaaggtctggaaggcgccggagcggatctccctggccgatgccatgcagaaa
tacctcatcgacaaggtctggagcaagccgctctcccgggccatcgacgcctcgggcaac
gaagtccgccacatctcgcacatcgtcgacggcagcgtcgtccggggcctcgtcgagggc
agtctgacggccgttcagatcgagggcgagatcgtcacgcgccagaagatcctcgcccag
acgatgagcgataccgtctacggcaaggtcatcctcgaaaccgtcagggacggacaggga
cgggtcgtcgccgagccgggccaggaggtcaatcatgccctcctcgacgccctcgtcatg
gctgatcccagtgaactcgtcgtccgccccatctacggtgcctcggagatgaaacgcctc
atccagcgcgtcggcttcgtccgccgtctccgcgaagagcctcagtacagtgccgtcatc
cacggcatcaccaaggcggctctcaacacggacagcttcctcagcgccgcttccttccag
cagacggcccaggttctggccaaggccgccgtcaggggcgacgtggaccccctcgtcggg
ctcaaggagaacgtcatcatcggtcacctcatccccgccgggacaggggcggaacactac
cggatccgacctcgatcggccgcgcccgaccgcgtcggaggcgagcccgaggaggcccct
gcggcgaatccctccgggaactga
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