Arachidicoccus sp. BS20: A9P82_12875
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Entry
A9P82_12875 CDS
T04406
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
arb
Arachidicoccus sp. BS20
Pathway
arb03410
Base excision repair
arb03430
Mismatch repair
arb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A9P82_12875
03430 Mismatch repair
A9P82_12875
03440 Homologous recombination
A9P82_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arb03400
]
A9P82_12875
DNA repair and recombination proteins [BR:
arb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
A9P82_12875
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
A9P82_12875
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A9P82_12875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ANI90097
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Position
complement(2963280..2964989)
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AA seq
569 aa
AA seq
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MDKRWNILPIDEVHERALHAVLKINPALCRILVQRGYKTFEKAKHFFRPELSMLHSPWLM
KDMDKAVNRITQAFQANEKILVYGDYDVDGTTSVASMYSFLKSIYPNVDYYIPHRYKEGY
GISKIGIDFAKENNFTLVVSLDCGIKAVELIDYSKTLDIDFVVCDHHLPDAKIPDAVAIL
NPKQKDCNYPYKELCGCGVGFKLMQALAEKLNLPDESYFQYLDLVATAIAADIVPITDEN
RVLAFYGLKKVNDNPSTGIKALLDLAQAKKGDIKIVDLVFMIAPRINAAGRMDDAKKAVQ
LFVEKDIEKAKEFAEVLHTDNSDRREADASITEEALELLQQDENVATKKTTVLFQHHWHK
GVVGIVASRLIETYYRPTIVLTQNENIVGGSARSVPGFNLYEAVHACREYLLGYGGHFAA
AGMTLLPENVDAFKEKFEEVVAQTITPELLIPEINIDTEIKFADITPSFYNIVQQMEPFG
PENMMPVFVSRNVDNTGLSRIVKEKHIRFVLKQGNHQFTGIGFNLADKFDILLTHKKIDV
VYKIDINEFQGNKTLQLRVIDFRAAESSN
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggataaacgctggaacatattgcccatagacgaagtgcatgaacgcgctttgcacgcg
gtgttgaaaatcaatcctgcactgtgcaggatactcgtgcagcgcgggtataaaacattt
gagaaagccaaacatttttttcgtcccgaattgtctatgctgcacagcccttggctgatg
aaagacatggataaggctgtaaaccgcattacacaagcatttcaggcgaatgaaaaaata
ttggtctatggcgattacgacgtggacggaacaacttccgtggcgagtatgtacagcttt
ttgaaaagcatttatccgaatgtagattactatattccgcatcgttacaaagaaggctac
ggaatttccaaaataggaattgactttgcgaaagaaaataattttacgttggtcgtgtcg
ctcgattgcggcattaaagccgttgaactgattgattattcaaaaactttggatatcgat
tttgtcgtgtgcgaccatcatttacccgatgcaaaaattcctgatgctgttgccatcttg
aatcccaaacaaaaagattgcaattatccgtacaaagaattatgcggctgcggcgtgggt
ttcaagcttatgcaggcgctggcggaaaaattaaatttacctgatgagtcttattttcaa
tatttagatttggtagcaacagcgattgctgcggacattgttccgattactgatgaaaac
agagttttagcgttttacggattaaagaaagtaaatgacaacccatccacaggcatcaag
gctttgctcgatttggcgcaggcaaaaaaaggcgacatcaagattgtggatttggtattt
atgattgcgccgcgcatcaacgctgccggcagaatggacgatgctaaaaaagccgtacaa
ttatttgtcgagaaggatattgagaaagcaaaagaatttgcagaggtcctgcataccgat
aattccgaccgcagggaagccgacgcgtctatcacggaagaagcattggaactgttgcag
caagacgaaaacgttgctacgaaaaaaacgactgtattgtttcaacatcattggcacaaa
ggcgttgtaggcattgtggcttcgcggttaattgaaacatattatcgcccaaccattgtg
cttacgcaaaacgaaaatattgtcggcggcagcgcacgtagtgtgccgggctttaacttg
tacgaagcggttcatgcgtgccgtgaatacttgctcggctacggcggacacttcgcagct
gcgggaatgacgcttttgcctgaaaacgtagatgcattcaaagaaaaatttgaagaagtt
gttgcacaaaccattacgcccgaactcttaattcccgaaataaacatcgatactgaaata
aaatttgcagacatcacaccatcattttacaacattgtccagcaaatggaaccttttggt
ccggaaaatatgatgcccgtttttgtttcccgaaacgtcgataacacgggactttcaagg
attgtgaaagaaaaacatatccgctttgtattgaagcaaggcaatcatcagtttacggga
atcggttttaatctcgcagataaatttgatattctgctcacgcacaaaaaaattgatgtg
gtatataaaatcgacatcaacgaatttcagggaaataaaactttgcaattgcgcgtgatt
gatttcagagccgccgaatcttccaattaa
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