Arcobacter sp. L: ABLL_0373
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Entry
ABLL_0373 CDS
T01834
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
arc
Arcobacter sp. L
Pathway
arc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABLL_0373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arc03019
]
ABLL_0373
03016 Transfer RNA biogenesis [BR:
arc03016
]
ABLL_0373
Enzymes [BR:
arc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABLL_0373
Messenger RNA biogenesis [BR:
arc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABLL_0373
Transfer RNA biogenesis [BR:
arc03016
]
Prokaryotic type
tRNA degradation factors
ABLL_0373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
CSD2
OB_RNB
DUF7648
Motif
Other DBs
NCBI-ProteinID:
BAK72248
LinkDB
All DBs
Position
356581..358431
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AA seq
616 aa
AA seq
DB search
MLRELFIKIQTECKNYSNDELNEIEKFLKDEIIIKNQNGNFELNSKYKIAIVNIGKNFVI
LEDLVSELKNIKIELEDLNGAYNGDLVLAKRVFNPRSKTKAKIVKILESKKAELLVYVKD
KAFYTLKENIRLDNKNALKYKELDVLIVDNKSFDLIKNVGNLNDSKIDEFISLYLYEELY
RLEKHLDVKALMDDKKQRVDLRDLAFCTIDPNSAKDHDDAIYFDKNENILYVAIADVSYF
VKEGSELDILAFKKSTSIYLPTKVLPMLPPILSEEMCSLKEGVDRYSYVFKMYLDLENFS
VKKAELFEAVINSHKNFSYGRIDRVIEGHLDQYSKVEKEIFDYLIPLYEISKKFRKRRLL
KGYDFRTTENRLKLRNDELESIDVETSTASHQLVEECMLMANIEASKKVNTVGIYRIHEE
PPFKAISKLVDDVNILGVNVKLQSDVHETITHIQEKAKNSMMSAEIDELIIQAQTQAKYS
SKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRILKTKQTPKNIDDICEHISLNERKVDQLV
WDFEDRKYARWAASHLGEELKVKVVDTEKAKAVCYEKIIGMKVILENYRGQKLFSKMRVK
IKSADIATKVIVVTIM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgctaagagaactatttataaaaattcaaacagaatgtaaaaattattcgaatgatgaa
ttaaatgaaatagaaaaatttttaaaagatgaaatcataataaaaaatcaaaatggcaat
tttgagttaaattctaaatataaaattgcaattgtaaatatcggaaaaaattttgtaatt
ttagaagatttagtaagtgaattaaaaaatataaaaattgaattagaagatttaaatggc
gcttataatggtgatttggtattagcaaaaagagtttttaacccaagaagtaaaactaaa
gcaaaaattgtaaaaatacttgaaagtaaaaaagctgaacttttagtttatgtaaaagat
aaagctttttatacattaaaagaaaatattagacttgataataaaaatgctttaaaatat
aaagaattagatgttttaattgttgataataaatcatttgatttgattaaaaatgttgga
aatttaaatgattcaaaaatagatgaatttatctctttatatttatatgaagaactttat
agattagaaaaacatttagatgtaaaagctttaatggatgataaaaaacaaagagttgat
ttaagagatttagcattttgtacgattgacccaaatagtgcaaaagaccacgatgatgca
atttatttcgataaaaatgaaaatattttatatgtagcgattgcagatgtttcatatttt
gtaaaagagggtagtgaacttgatattttagcatttaaaaaatctacttctatttatctt
cctacaaaagttttaccaatgcttcctccaattttgagtgaagagatgtgttcattaaaa
gaaggagttgatagatactcttatgtttttaaaatgtatttagatttagaaaattttagt
gtgaaaaaagctgagctttttgaagcagttataaattcccacaaaaatttctcttatgga
agaattgatagggttattgaaggacatcttgaccaatattcaaaagttgaaaaagagata
tttgactatttaattcctttatatgaaattagtaaaaaatttagaaaaagaagattatta
aaaggttatgattttagaacaactgaaaatagattaaagttaagaaatgatgaacttgaa
tctattgatgttgaaacatcaacagcatctcatcagttagttgaagagtgtatgttaatg
gcaaatatagaagcaagtaaaaaagtaaatacagttggaatatataggattcatgaagaa
ccaccttttaaagcaatttcaaaacttgtagatgatgtaaatattttgggagttaatgta
aaacttcaaagtgatgttcatgaaacaataacacacattcaagaaaaagcaaaaaattca
atgatgagtgcagaaattgatgaactaattatccaagctcaaacacaagctaaatatagt
tcaaaaaatctaggacattttggtttaggattctcttcttattctcattttacatcacca
attagaagatattcagatttagtcttacatagaattttaaagacaaaacaaactccaaaa
aatatagatgatatttgtgaacatatctctttaaatgaaagaaaagttgatcaacttgtt
tgggattttgaagatagaaaatatgcaagatgggcagcttctcatttaggtgaagaacta
aaagtaaaagttgttgatacagaaaaagcaaaagctgtttgttatgaaaaaattattgga
atgaaagtaattttagaaaattatagaggacagaaattattttcaaaaatgagagtgaaa
ataaaatctgccgatattgctacaaaagttatagttgtaactataatgtag
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