Arcanobacterium buesumense: HC352_00620
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Entry
HC352_00620 CDS
T06546
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arca
Arcanobacterium buesumense
Brite
KEGG Orthology (KO) [BR:
arca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arca03019
]
HC352_00620 (hrpA)
Enzymes [BR:
arca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HC352_00620 (hrpA)
Messenger RNA biogenesis [BR:
arca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HC352_00620 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_19
DEAD
AAA_22
HA2_N
nSTAND3
T2SSE
NACHT
SRP54
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
QJC21168
UniProt:
A0A6H2EHX8
LinkDB
All DBs
Position
complement(138358..142500)
Genome browser
AA seq
1380 aa
AA seq
DB search
MSTEKCHSAKHRRPRRHAQSQRGPRPFTPEQLAARKASVPDISYPEQLPVSARRADIMAA
IAANQVVIIAGETGSGKTTQLPKMCLELGRGISGMIGHTQPRRIAARAVAQRICDELDVE
LGGPIGYHVRFTEEVSPTTLVKLMTDGILLAEIQSDPMLRRYDTIIIDEAHERSLNIDFL
MGYLAQLLPKRPDLKLIITSATIDSQRFAQHFGRFIHNGGDDVVAPVIEVSGRTFPVDIR
YRPLDGETETLPSGENAEYLSREEAHDQITGIIDAADELMNEGPGDILVFLSGEGEIRET
FKAFKDELGNRFIEPGGHSSVPGAVEIMPLYARLSAAEQQRIFQPHNYRRIVLATNIAET
SLTVPGIRYVIDPGTARISRYSPRTKVQRLPIEPISQASANQRSGRSGRVADGIAIRLYS
EEDFTSRPEFTEPEIQRTSLAAVILQMASLGLGTVADFPFIDPPDLKAVRAGIQLLEEIG
ALEPDTRTPVLTKIGRKLARLPIDPRLGRMLLAAVDNGAATEVLVLVAAMSVQDVRERPA
EYKAQADQLHARFTEPSSDFLAYLNLWRYLRTQQRDLSGSAFRRMCRAEYVNWLRFREWQ
DVVAQLRELAKPLGITLKNIALPTPAQIQQARDKHNDVSQHRDVIHAVKAVGASADAPAA
DAIHRSLLVGLLSNVGSYDQRKRDYLGARGTHFVTWPGSGLARRTPDWVMAAELVETSRL
FARTVAKIDPAWIERVGAHLIKRTYSDPFWSTRDGAAKVHEKVLLYGLTVTADRQVLLSS
VGTPSARELAREMFIRHALVEGQWRTHHRFIKDNKAALDDAREVEERLRSHALVADEDAQ
YVFFDERIPESIVSARHFDSWWKKERHNRPDLLTFTREFLLGETDASDDDFPTEWVQGDV
TLPIDYTFVPGSHADGLTIDIPVTLLPQLTDDGFDWLVPGMLDELVIATIRALPKRIRRH
LVPAPDVARQIRSELPDWESVAHGQTGAMSFQDAFTMAVRDLRGIEIEDDSWADVVLPGH
LTINFRVRSERGAVLDEGNSVEYLQRSLAPQTRTAVEHVVKKAVSQALEAELTEPGITEA
FTQRHLTTWPKLDGDEIPASIETTGAHGLTIRGYPALVETPGKSGFSVELRVLAEPAEQV
RDHRHGIIRLLTTELALPEARITSRWTGRESLAMAASTYPTTSALITDLHVAAIRNLADQ
WAHENKKPLGTLRHRSDYESLRTWLRDRFEDEIYRIAQIVVRVLEAYGEVDSLLRTTSSL
ALINTVTDVRDYVTRLVSDGFIRRTPSEYLAHLPRYLNAARIRLEKAPTNPADDSLAWQV
GEISDEVDKERQAMGSYDPQRAAALVKARWMIEELRVSLFAQQLGTHGKVSVQRIRKLLG
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgaaaaatgccattcagccaagcaccgtcggcctcgacgccacgcacaatcc
caacgcggtccacgccccttcacccccgaacaactcgctgcccgcaaagccagcgtccca
gacatcagttatccggaacagcttcccgtctcagcccggcgcgccgatatcatggcggcc
atcgcagctaaccaagtcgtgattatcgctggcgaaaccggttccggaaaaaccactcag
cttcctaaaatgtgcctcgaactcgggcgcggaatcagtggaatgattggccacacccag
ccccgacgaatcgccgcccgcgcagtggctcagcgaatctgcgacgaactcgacgtcgaa
ctcggcggaccaatcggataccacgtacgcttcaccgaagaagtctcccccaccacgctc
gttaaactcatgacagacggcattctgctcgccgaaatccaatccgacccgatgctgcgc
cgctacgacaccatcatcatcgacgaagcccacgaacgctccctcaacattgatttcctt
atgggctacctcgcccaactcctccccaaacgccccgatctcaaactcatcatcacctcc
gcaaccatcgattcccaacggttcgcacaacacttcgggcggtttattcacaacggaggt
gacgacgtcgtcgccccagttatcgaagtctctggacgtaccttccccgtcgacattcga
taccgtccgctcgacggcgaaaccgagacactgccaagcggcgaaaacgccgaatacctc
agtcgcgaagaagcccacgaccaaatcaccggaattatcgatgccgccgacgaactcatg
aacgaaggacctggcgatatcctcgtcttcctctccggcgaaggcgaaatccgcgaaaca
ttcaaagcgttcaaagacgaactcggcaaccgattcattgaaccaggcggccactcctcc
gtacctggagccgtcgaaatcatgccactatacgctcgactatcagcggccgaacaacaa
cgcatcttccaaccacacaactatcggcgcatcgtgctggccaccaacattgccgaaaca
tcgttgaccgtgcccggaatccgctatgtcattgaccccggaaccgcacgaatttcacgc
tattcgccacgcaccaaagtccaacgcctgcccattgagccaatttcgcaagcctctgct
aatcaacgctcgggccgttctggtcgcgtggctgacggtattgctatccggctttattct
gaagaagacttcacctcccggccagaatttactgagccagaaatccagcgcacctcgcta
gcggcagtcattttacagatggcatcgctcggattaggcacggttgccgacttccctttc
atcgatccgccggacctgaaagccgtacgcgccggcatccaactattggaagaaatcggc
gccctcgaacccgatacccgaactcccgtgctgactaaaattgggcgcaaacttgctcga
ttaccaatcgatccgcgactggggcgaatgctccttgccgcggtagataatggcgccgcc
accgaagtacttgtgttggttgccgccatgtccgtccaagatgtccgcgagcgccctgcc
gaatataaggcgcaagccgatcagcttcacgcccgctttaccgaacccagctcggacttc
ttagcctacttgaatctgtggcggtatttacgtacccagcaacgcgacctgtctggttcc
gcattccggcgcatgtgccgagctgagtatgtgaactggttgcggttccgcgagtggcaa
gacgtcgtcgcccagttgcgcgaactggccaaaccgctaggcatcacgctgaaaaacatt
gccctgccaacccctgcgcaaatccagcaagcacgcgacaaacataacgacgtcagccaa
catcgcgatgtcatccatgcggtcaaagctgtgggtgcttcggctgatgcgccggcggct
gatgcgatccaccgctccctccttgtaggcttgctttctaacgtcggctcctacgatcaa
cgcaaacgtgactatcttggtgcgcgtggcacccacttcgtcacctggcctggatctggg
cttgctcggcgcactccggactgggtgatggccgctgaactggttgaaacatcacggctt
tttgcacgcaccgtagccaaaattgatccagcctggatcgagcgggtgggcgcacatctg
atcaaacgcacctactccgacccgttctggtccacccgcgacggagcggcgaaagtacac
gaaaaagtcctactctacggattgaccgttactgccgatcggcaagtgttactatcttcc
gttggcacaccgtccgcacgtgaacttgcccgtgagatgtttatccggcacgcacttgtg
gaaggccaatggcgcacacatcaccggtttattaaagacaacaaggccgcgctcgacgac
gcccgcgaagttgaagaacggttgcgaagtcacgctcttgtagctgatgaggatgcccaa
tacgtatttttcgacgaacgcatccccgagtccatcgtctcagcacgccacttcgattcc
tggtggaagaaggaacggcataaccgtccggacctgctcaccttcacgcgcgagtttttg
cttggcgaaaccgatgcatccgatgacgacttccctactgaatgggtacaaggcgatgtc
acgttgccaattgactatacctttgtgcccggttcacatgccgacggactcacgattgac
ataccggtaactttgcttcctcaactcaccgatgatggcttcgattggcttgttcccggt
atgctcgacgaactcgttattgctactattcgggcacttcctaaacggattcggcgtcac
ctcgtgccggcacccgatgttgctcggcaaattcgcagcgaacttcccgactgggaaagc
gtggcgcacggccaaaccggtgcaatgagtttccaagacgcatttactatggcggtacgc
gacctgcgcggaatcgagatcgaagacgattcctgggcggatgtcgtattgcctggacat
ttgactattaacttccgggtgcgctccgaacgtggcgcagtgttggatgaaggaaactcc
gtcgaatatttacaacgctcgcttgctccgcaaacgcgcaccgccgtcgaacacgtcgtc
aaaaaagctgtctctcaggctcttgaagcagagttaaccgaaccagggataactgaagcg
tttactcaacgtcatctcaccacctggccgaaacttgatggtgacgaaattcccgctagc
attgaaaccactggcgctcatggcctgacgattcgcggctatcccgctttagttgaaacg
ccagggaaaagcggctttagcgtagaactgcgagtactagctgagccggcagaacaggta
cgcgaccaccggcatgggattatccgactcctcactactgagcttgccctaccagaagca
cgtatcaccagccgatggaccgggcgcgaatctttagcgatggcggcatccacctacccc
actaccagcgcgctcatcactgatcttcatgttgctgctattcgtaatctggctgaccag
tgggctcacgaaaataagaaaccactaggtacgctccgtcatcgtagcgactatgagtca
ctacgtacgtggttacgtgaccgattcgaagatgaaatctatcggatcgcacagatcgtg
gttcgggtcttggaggcatacggggaggttgatagcttattgcgcaccacatcctcgctg
gcactgatcaatacggtaactgacgttcgtgactatgtaacccgcctcgtttctgatggt
tttattcgaagaactccaagcgagtacctcgcgcatcttccgcgctacctcaatgccgcg
cgaattcggttagagaaggcaccaacgaatccggctgatgattcgctggcgtggcaggtt
ggcgaaattagcgatgaagttgataaggaacggcaggcaatgggaagctatgatccgcag
cgtgccgcggctttagtgaaggctcgctggatgattgaggaactgcgtgtttcgcttttt
gcccagcagttaggaactcatggcaaggtgtccgtgcagcgaatccgaaaactgctcggg
tag
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integrated database retrieval system
