Entry |
|
Name |
|
KO |
|
Organism |
ard Actinomyces radicidentis
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:ard00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AXF14_03180
09124 Replication and repair
03420 Nucleotide excision repair
AXF14_03180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ard03021]
AXF14_03180
03400 DNA repair and recombination proteins [BR:ard03400]
AXF14_03180
Enzymes [BR:ard01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF14_03180
Transcription machinery [BR:ard03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AXF14_03180
DNA repair and recombination proteins [BR:ard03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AXF14_03180
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
746170..747885
|
AA seq |
571 aa
MSPSPAVPDGPLIVQSDKTVLLEVAHADAADARRAIAPFAELERAPEHIHTYRITPLALW
NARAAGLDAETVIHVLITYSRFPVPHSLLTEIAETMGRYGRLQLVTVPAHGLVLHATDVP
VLEEVMRSKRTKGLLGERLSPEDVVVHPSERGNLKQVLIKLGWPAEDLAGYVDGEKHPIV
LQDSPEGVAAGEPGAFALRPYQEQAVDAFWAGGSGVVVLPCGAGKTLVGAAAMARSSTTT
LILVTNAVSARQWKEELIRFTSLTEDEIGEYSGSRKEVRPVTIATYQVLTMKRKGVYPHL
DLLDAHDWGLIVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKR
YDAPWKDLENQGWIAPAVCTEVRLTLDAGERMTYATAESEDRYRLAATTPRKVAVVDAVL
ARHRGESALVIGQYVDQLEELAEHLGAPVITGATTVRERQKLYDAFRAGEVDTLVVSKVA
NFSIDLPGASVAVQVSGSFGSRQEEAQRLGRIVRPKEDGRQAHFYTVVTRDTVDQEFAAH
RQRFLAEQGYAYDVVDAEDLAGDGEDSPAGA |
NT seq |
1716 nt +upstreamnt +downstreamnt
atgtccccctcccccgcggtccccgacggcccgctcatcgtccagagcgacaagacggtc
ctgctcgaggtggcccacgccgacgccgccgacgcgcgccgcgccatcgcgcccttcgct
gagctcgagcgcgccccggagcacatccacacctaccggatcacgccgctggcgctgtgg
aacgcccgcgccgccggcctcgacgccgagaccgtcatccacgtcctcatcacctactcg
cgcttcccggtgccgcactcgctgctcaccgagatcgccgagaccatgggccgctacggg
cgtctccagctcgtcaccgtccccgcccacggcctcgtcctccacgccaccgacgtcccc
gtgctcgaggaggtcatgcgctccaagcgcaccaagggcctgctcggtgagcgcctctcc
ccggaggacgtcgtcgtccacccctccgagcgcggcaacctcaagcaggtcctcatcaag
ctcggctggcccgcggaggacctcgccgggtacgtcgacggcgagaagcaccccatcgtg
ctccaggactcccccgagggcgtcgccgcgggtgagcccggcgccttcgcgctgcgcccc
taccaggagcaggccgtggacgcgttctgggccggcggctccggcgtcgtcgtcctgccc
tgcggggccgggaagaccctcgtcggcgcggccgccatggcgaggagctcgaccacgacg
ctcatcctcgtcaccaacgccgtctccgcacgccagtggaaggaggagctcatccgcttc
acctccctgacggaggacgagatcggcgagtactcgggctcccgcaaggaggtccggccc
gtcaccatcgcgacgtaccaggtgctcaccatgaagcggaagggcgtctacccgcacctc
gacctgctcgacgcccacgactggggcctcatcgtctacgacgaggtccacctcctgccc
gccccgatcttccgcatgacggcggacctgcaggcgcgtcgccggctcgggctcaccgcc
accctggtgcgcgaggacgggcgcgaggacgaggtcttctcgctcatcggtcccaagcgc
tacgacgccccgtggaaggacctggagaaccagggctggatcgcgcccgcggtgtgcacg
gaggtgcggctgacgctggacgccggggagcgcatgacctacgcgaccgcggagtccgag
gaccgctaccgcctcgccgcgaccacgcctcgcaaggtcgcggtggtggacgccgtgctg
gcgcggcaccggggcgagtccgcgctcgtcatcgggcagtacgtggaccagctcgaggag
ctcgccgagcacctcggcgcgcccgtcatcaccggtgcgacgaccgtccgcgagcgccag
aagctctacgacgccttccgcgccggggaggtggacacgctcgtcgtctccaaggtcgcg
aacttctccatcgacctgccgggggcgagcgtcgccgtgcaggtgagcgggtccttcggg
tcccggcaggaggaggctcagcgcctcgggcggatcgtgcgccccaaggaggacggccgc
caggcgcacttctacacggtggtcacgcgggacacggtggaccaggagttcgcggcgcac
cggcagcgcttcctggcggagcagggctacgcctacgacgtcgtcgacgccgaggacctc
gccggggacggggaggactcgcccgccggggcctga |