Actinomyces radicidentis: AXF14_05815
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Entry
AXF14_05815 CDS
T04288
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ard
Actinomyces radicidentis
Brite
KEGG Orthology (KO) [BR:
ard00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ard03019
]
AXF14_05815
Enzymes [BR:
ard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AXF14_05815
Messenger RNA biogenesis [BR:
ard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AXF14_05815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
PhoH
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
AMD87191
UniProt:
A0A0X8JEK8
LinkDB
All DBs
Position
complement(1389806..1394698)
Genome browser
AA seq
1630 aa
AA seq
DB search
MEPQPLRLIDAASFPGQPWGRMGSRMSNETSTETHTDAADDRRTDEHRGSARGRRSGHDG
RKGRSERGRRSGRREWSGFSEEQLAERAASVPALVYPEELPVSSRRQEIADAIRDNQVVI
VAGETGSGKTTQLPKICLGLGRGVTGMIGHTQPRRIAARSVAERIASELGTPIGRDGVVG
YQVRFTEETGPNTLVKLMTDGILLAEIQSDPMLRRYDTIIVDEAHERSLNIDFILGYLAR
LLPQRPDLKVIITSATIDSERFAEHFGHPVSRGAESGAASGAAPEGPGESAPADSGALTG
WAPAPVIEVSGRTYPVEIRYRPLDPDDGEDVPSGAGGASASSAEPRERTHGTAPAGELTD
DELEALTSPDPAVRAAARARREQVRSRADSLSSRDTASLAPRNQGAHGKGHGRSGSTGPQ
DEPHDQVTGILDACDELMAAGPGDILVFLAGERDIRDTESALIDHLGPRYSPDGRARSVG
AVEVVPLYSRLSAAEQHRVFEHHSVRRIVLATNVAETSLTVPGIRYVVDPGLARISRYSN
RTKVQRLPIEPVSQASANQRAGRCGRVADGIAIRLYSEPDYLSRPEYTEPEILRTSLASV
ILQMASLGLGAVEDFPFIDSPDPRAVRDGVQLLTEIGAIEPDSGRRRASRDDDEPESRGS
HSSRRGPRLTQVGRRLARLPIDPRLGRMLLEAGELGCAGEVMVIVAALSIQDVRERPADK
QEQADAMHRRFADVTSDFLTYLNLWRYLRTQQRELSGSAFRRMCKAEFLHYLRVREWQDV
HQQLRQLARPLGLDASPVELPTARSIRAAGEALEPGSHAAQIAHGDVAAAVVALGRSADT
PDADAIHRSLLVGLLSNVGSWDERRREYAGARGTKFIIWPGSGLRRKTYDWVMTAELVET
SRLFARTVAKVDPRWVEETAQRAGLLKRVYGEPYWSTKPGAAMVHEKVLLYGMTLAADRP
ATLASVGTPAAREVAREMFIRSALVEGDWHSRHGFLERNRDLVEELSDVESRRREHGLLA
GDEALFRFYDERLPEEVTGANDFDAWWKREKGRRPDLFDYTRELLLPGGDDADGYPDTWV
QGDLTLGLEYVFEPGRHDDGVSVQVPVEVLGRLQPGGFDWLVPGMRPELVVGAIRSLPKR
VRRQLVPAPDVGAQVWAAMREEYPTPEGASAPAVPFQEAFAATVRRLKDVEVTDADWAKL
EARLPDHLRVSFAALDARGREIGRGKDLVALQKRLSGRTEQAVRSAVKGALAQAMQEAQD
RESSRAKKRGRKGRKGRAGRSDDAAQVRQGGRDGASSATPGSVPGAGVDVSGRSGGIRKG
LAERKGLTDWPSKVPGLLEPEGSTIPATVESTGTAGLVVRGYPTLVAASARTADLTILPD
ATAQHRSHGAGVTALALARTFLATGRVTSRWNATESLALAASPYRSTDALVEDVELAAAR
VVAARWAASSGQPLAEVRDRGVFGELVTAMRAELEDEVYAVARTVAKTLAAQREVERAVG
AHTSLALLSALQEVREHVAVLVHPGFVSETPAGELAHLPRYLRALAMRVEKAESSPSQDA
ALAYQVREAEAALDKARTRAAALPADEEREAVLEDARWLIEELRVSLFAQTLGTSRKVSP
QRVNKLLAKV
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atggagccacaacctctccgcctgatcgacgccgcatccttccccgggcaaccgtggggg
agaatgggcagccgtatgagcaacgagacgagcaccgagacgcacacggacgccgcggac
gaccgccgcaccgacgagcaccgcggcagcgcccggggacgccggtccggccacgacggg
cgcaagggccgctccgaacgcgggcgccgttcgggccgccgcgagtggtcgggcttctcc
gaggagcagctcgccgagcgcgccgcgagcgtccccgcgctcgtctaccccgaggagctc
ccggtctcctcgcgccgtcaggagatcgccgacgcgatccgcgacaaccaggtcgtcatc
gtcgcgggcgagaccggctcgggaaagacgacccagctgccgaagatctgcctggggctc
ggccggggcgtcaccgggatgatcgggcacacccagccccgccgcatcgccgcccggagc
gtggccgagcgcatcgcgagcgagctgggcaccccgatcgggcgcgacggcgtcgtcggc
taccaggtccgcttcaccgaggagacgggcccgaacaccctcgtcaagctcatgacggac
ggcatcctgctcgcggagatccagtccgacccgatgctgcgccgctacgacacgatcatc
gtggacgaggcccacgagcgcagcctcaacatcgacttcatcctgggctacctggcgcgg
ctcctcccccagcgccccgacctcaaggtcatcatcacctccgcgacgatcgactccgag
cgcttcgccgagcacttcggccacccggtctcccgcggcgctgagtcgggcgccgcgtcc
ggcgcggcccccgagggcccgggcgagagcgctcccgccgacagcggcgccctcaccggc
tgggcgccggcccccgtcatcgaggtctccgggcgcacctaccccgtcgagatccgctac
cgcccgctcgatcccgacgacggcgaggacgtcccctccggcgcaggcggcgcctccgcc
tcatccgcggagccccgcgagcgcacccacggcaccgccccggcgggcgagctcaccgac
gacgagctcgaggccctcacctccccggacccggccgtccgggccgccgcccgcgcccgc
cgcgagcaggtccgctcgcgtgctgacagcctgtcctcacgtgacacggcctcactcgcc
ccgcgcaaccagggcgcccacggcaagggccacggtcgctccggctccaccggtccccag
gacgagccgcacgaccaggtcaccgggatcctcgacgcctgcgacgagctcatggccgcc
ggaccgggtgacatcctcgtcttcctcgccggcgagcgggacatccgcgacaccgagtcc
gcgctcatcgaccacctcggtccccgctacagcccggacggccgggcccgcagcgtcggc
gccgtcgaggtcgtccccctgtactcgcgcctgtccgccgccgagcagcaccgcgtcttc
gagcaccacagcgtgcgccgcatcgtgctcgccacgaacgtcgccgagacctcgctgacg
gtccccgggatccggtacgtcgtcgacccgggccttgcccgcatctcgcgctactccaac
cgcacgaaggtccagcgcctccccatcgagcccgtgagccaggccagcgccaaccagcgc
gccggccgctgcggccgcgtcgccgacggcatcgccatccgcctctactcggagccggac
tacctctcccgccccgagtacaccgagccggagatcctgcgcacctcgctcgcgagcgtc
atcctgcagatggcgagcctcgggctgggcgccgtcgaggacttccccttcatcgactcc
cccgacccgcgggccgtgcgcgacggcgtccagctcctcacggagatcggcgccatcgag
ccggactcggggcgtcggcgcgcctcccgcgacgacgacgagccggagtcccgcggctcc
cactcctcgcgccggggtccgcgcctcacgcaggtcggccgccgcctggcgcgcctgccc
atcgacccgcgactgggccgcatgctcctcgaggcgggcgagctcggctgcgcgggcgag
gtcatggtcatcgtcgccgccctgtccatccaggacgtccgcgagcgcccggccgacaag
caggagcaggccgacgccatgcaccgccgcttcgccgacgtgacgagcgacttcctcacc
tacttgaacctctggcgctacctgcgcacccagcagcgcgagctctccggctcggccttc
cgccgcatgtgcaaggcggagttcctccactacctgcgcgtgcgggagtggcaggacgtg
caccagcagctgcgccagctggcccgtccgctgggcctggacgcctcccccgtcgagctg
ccgacggcgcgctccatccgcgccgcgggcgaggcgctcgagcccggctcgcacgcggcg
cagatcgcccacggggacgtcgcggccgccgtcgtcgcgctcggccgcagcgctgacacc
ccggacgccgacgcgatccaccgctccctgctcgtcgggctcctgtccaacgtcggctcc
tgggacgagcggcgccgcgagtacgccggcgcccgcggcacgaagttcatcatctggccg
ggctcgggcctgcgcaggaagacctacgactgggtcatgaccgccgagctcgtcgagacg
agccgcctcttcgcccgcacggtggcgaaggtggacccgcgctgggtggaggagacggcc
cagcgcgcgggcctgctcaagcgcgtctacggcgagccctactggtcgaccaagcccggc
gccgcgatggttcacgagaaggtcctcctctacgggatgacgctcgccgcggaccgcccg
gcgacgctcgcctccgtgggcacgcccgcggcccgcgaggtcgcccgggagatgttcatc
cgctcggcgctcgtcgagggcgactggcactctcgccacggcttcctcgagcgcaaccgc
gacctcgtcgaggagctctccgacgtcgagtcccgccgccgcgagcacggcctgctcgcc
ggcgacgaggccctcttccgcttctacgacgagcgcctccccgaggaggtcaccggcgcg
aacgacttcgacgcctggtggaagcgggagaagggccgccgccccgacctgttcgactac
acgcgcgagctgctgctgccgggcggggacgacgctgacggctacccggacacgtgggtc
cagggcgacctcaccctcggcctcgagtacgtcttcgagccgggccgtcacgacgacggc
gtgagcgtccaggtgcccgtcgaggtcctggggcgtctgcagccgggtggcttcgactgg
ctcgtgcccgggatgcgccccgagctcgtcgtcggcgcgatccggtcgctccccaagcgg
gtgcgccgccagctcgtgcccgctcccgacgtcggcgcccaggtgtgggcggcgatgcgc
gaggagtacccgacgccggagggcgcctccgccccggccgtccccttccaggaggccttc
gcggcgacggtgcgccgtctcaaggacgtcgaggtcaccgacgccgactgggcgaagctc
gaggcgcgcctgcccgaccacctgcgcgtctccttcgcggcgctggacgcccgcggccgg
gagatcggccgcggcaaggacctcgtcgccctgcagaagcgcctgtccggtcgcaccgag
caggcggtgcgctccgccgtcaagggcgcgctcgcccaggcgatgcaggaggcccaggac
cgcgagagcagccgtgccaagaagcgcgggaggaagggccggaagggccgcgcaggtcga
tccgacgacgccgcgcaggtccgtcagggcggccgcgacggggcctcctccgcgaccccg
ggcagcgtcccgggcgccggcgtcgacgtctccgggcgcagcggcgggatccgcaaggga
ctggccgagcgcaagggcctcacggactggccgagcaaggtgcccgggctgctcgagccg
gagggctcgacgatccccgcgaccgtggagtccacggggacggcagggctggtcgtgcgc
ggctacccgacactcgtcgccgcctcggcgcgcaccgcggacctcacgatcctcccggac
gcgaccgcgcagcaccgctcgcacggcgccggcgtcacggcgctggcactcgcgcgcacc
ttcctggcgacgggccgggtgacgagccggtggaacgcgacggagtccctggcgctggcc
gccagcccgtacaggtcgacggacgccctcgtcgaggacgtcgagctggccgccgctcgc
gtcgtcgcggcccgctgggcggcctcctcggggcagccgctcgcggaggtgcgcgaccgc
ggcgtcttcggcgagctcgtcaccgccatgcgcgccgagctcgaggacgaggtctacgcc
gtcgcccggacggtcgccaagaccctcgccgcgcagcgggaggtggagcgggccgtcggc
gcgcacacgagcctcgcgctgctgtccgcgctgcaggaggtccgagagcacgtcgcggtc
ctcgtccacccgggcttcgtctcggagactcccgcgggcgagctcgcccacctgccgcgg
tacctgcgggcgctggcgatgcgggtcgagaaggcggagtcctcgccgagccaggacgct
gccctcgcctaccaggtgcgcgaggccgaggcggcgctggacaaggcgcgcacccgcgcc
gccgccctgcccgcggacgaggagcgggaggcggtcctggaggacgcgcgctggctcatc
gaggagctccgagtgagcctcttcgcgcagaccctcgggacgagccgcaaggtgagcccc
cagcgggtcaacaagctcctcgccaaggtctga
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